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At least 163 records · Page 9

Fast myosin binding protein C knockout in skeletal muscle alters length-dependent activation and myofilament structure

In striated muscle, the sarcomeric protein myosin-binding protein-C (MyBP-C) is bound to the myosin thick filament and is predicted to stabilize myosin heads in a docked position against the thick filament, which limits crossbridge formation. Here, we use the homozygous Mybpc2 knockout (C2 -/- ) mouse line to remove the fast-isoform MyBP-C from fast skeletal muscle and then conduct mechanical functional studies in parallel with small-angle X-ray diffraction to evaluate the myofilament structure. We report that C2 -/- fibers present deficits in force production and calcium sensitivity. Structurally, passive C2 -/- fibers present altered sarcomere length-independent and -dependent regulation of myosin head conformations, with a shift of myosin heads towards actin. At shorter sarcomere lengths, the thin filament is axially extended in C2 -/- , which we hypothesize is due to increased numbers of low-level crossbridges. These findings provide testable mechanisms to explain the etiology of debilitating diseases associated with MyBP-C.

59 BASIC BIOLOGICAL SCIENCES↗

Automatic Search of Cataclysmic Variables Based on LightGBM in LAMOST-DR7

The search for special and rare celestial objects has always played an important role in astronomy. Cataclysmic Variables (CVs) are special and rare binary systems with accretion disks. Most CVs are in the quiescent period, and their spectra have the emission lines of Balmer series, HeI, and HeII. A few CVs in the outburst period have the absorption lines of Balmer series. Owing to the scarcity of numbers, expanding the spectral data of CVs is of positive significance for studying the formation of accretion disks and the evolution of binary star system models. At present, the research for astronomical spectra has entered the era of Big Data. The Large Sky Area Multi-Object Fiber Spectroscopy Telescope (LAMOST) has produced more than tens of millions of spectral data. the latest released LAMOST-DR7 includes 10.6 million low-resolution spectral data in 4926 sky regions, providing ideal data support for searching CV candidates. To process and analyze the massive amounts of spectral data, this study employed the Light Gradient Boosting Machine (LightGBM) algorithm, which is based on the ensemble tree model to automatically conduct the search in LAMOST-DR7. Finally, 225 CV candidates were found and four new CV candidates were verified by SIMBAD and published catalogs. This study also built the Gradient Boosting Decision Tree (GBDT), Adaptive Boosting (AdaBoost), and eXtreme Gradient Boosting (XGBoost) models and used Accuracy, Precision, Recall, the F1-score, and the ROC curve to compare the four models comprehensively. Experimental results showed that LightGBM is more efficient. The search for CVs based on LightGBM not only enriches the existing CV spectral library, but also provides a reference for the data mining of other rare celestial objects in massive spectral data.

79 ASTRONOMY AND ASTROPHYSICS↗

ExoReL{sup R}: A Bayesian Inverse Retrieval Framework for Exoplanetary Reflected Light Spectra

The high-contrast imaging technique is meant to provide insight into those planets orbiting several astronomical units from their host star. Space missions such as Wide-Field InfraRed Survey Telescope, Habitable Exoplanet Imaging Mission, and Large Ultra-Violet/Optical/InfraRed Surveyor will measure reflected light spectra of cold gaseous and rocky planets. To interpret these observations, we introduce ExoReL{sup R} (Exoplanetary Reflected Light Retrieval), a novel Bayesian retrieval framework to retrieve cloud properties and atmospheric structures from exoplanetary reflected light spectra. As a unique feature, it assumes a vertically nonuniform volume mixing ratio (VMR) profile of water and ammonia, and uses it to construct cloud densities. In this way, clouds and molecular mixture ratios are consistent. We apply ExoReL{sup R} on three test cases: two exoplanets (υ And e and 47 Uma b) and Jupiter. We show that we are able to retrieve the concentration of methane in the atmosphere, and estimate the position of clouds when the signal-to-noise ratio of the spectrum is higher than 15, in line with previous works. Moreover, we described the ability of our model to give a chemical identity to clouds, and we discussed whether or not we can observe this difference in the planetary reflection spectrum. Finally, we demonstrate how it could be possible to retrieve molecular concentrations (water and ammonia in this work) below the clouds by linking the nonuniform VMR profile to the cloud presence. This will help to constrain the concentration of water and ammonia unseen in direct measurements.

79 ASTRONOMY AND ASTROPHYSICS↗

Proton beam position measurement in air using a BPM

A Beam Position Monitor (BPM) is potentially useful to measure the position and phase of the beam in air in a non-destructive way. An air-gap BPM in experiments, such as beam-induced radioactive waste management and dynamic radiography applications, where a so-called air gap is needed, can be utilized to measure the beam position and phase. In this study, a stripline BPM was used in the air-gap of an 800 MeV proton beam transport line. The downstream end of the primary beamline exit window was made of a thin aluminum plate and allowed the beam to travel 1.2 m in ambient air before re-entering into a vacuum drift section. Such a configuration was arranged to examine the BPM effectiveness in atmospheric temperature and pressure where ionization of air occurs. In this study, a high energy (800 MeV), high current (0.6 A beam peak current/pulse) proton beam of 5 mm radius was transported in the air. The beam position relative to the axis was measured by detecting the signature of the beam in a nanosecond scale. This nanosecond scale detection ability was useful to identify other signals such as plasma effects. The BPM signals were processed at a frequency of 201 MHz; thus, one gets a stronger response in a stripline pattern as it was used in this study instead of a dot-type BPM. Experimental data show that the BPM works well in air, but ionization of air or plasma formation could not be measured over the BPM signal. The design, construction, and performance of a BPM in air environment are presented.

43 PARTICLE ACCELERATORS↗

Frequency-domain modeling of floating wind arrays with shared mooring lines

A frequency-domain model for floating wind turbine dynamics has been extended to model floating wind farms with couplings from shared mooring systems. The model, called RAFT, could previously calculate the mean offsets and wave-induced response spectra for single floating wind turbines. Now, the model supports multiple floating wind turbines, each with their own properties and responses, along with mooring lines that run directly between floating wind turbines in the array, meaning that shared mooring lines or fully suspended dynamic power cables can be included. This capability is achieved by setting up an array-level solution of the system mean offsets and assembling the full system matrices for solving the dynamic response. The quasi-static mooring model MoorPy is used to linearize the mooring system properties. To compute the floating wind turbine relative motions, phase offsets are applied to each turbine's response as a function of wave frequency based on the wavelength and relative positions in the array. These differential motions are then applied to mooring system tension Jacobians to compute the tension loads in the shared mooring lines. Overall, the capability provides a frequency-domain analog to the modeling capabilities of the floating support structure in FAST.Farm. Mean offsets and power spectral density plots of responses are compared between RAFT and FAST.Farm to verify the implementation. The results indicate good agreement within the expectations of a frequency-domain modeling approach and suggest correct implementation of the shared mooring aspects. Additionally, a unique comb-like frequency response in the shared mooring line tensions has been observed. This phenomenon has a clear physical basis and may be an important design consideration for future shared mooring systems.

17 WIND ENERGY↗

Tracing the Evolution of the Cool Gas in CGM and IGM Environments through Mg II Absorption from Redshift z = 0.75 to z = 1.65 Using DESI-Y1 Data

We present a measurement of the mean absorption of cool gas traced by Mg II (λλ2796, 2803) around emission line galaxies (ELGs), spanning spatial scales from 20 kpc to 10 Mpc. The measurement is based on crossmatching the positions ELGs at z = 0.75–1.65 and the metal absorption in the spectra of background quasars with data provided by the Year 1 sample of the Dark Energy Spectroscopic Instrument. The ELGs are divided into two redshift intervals: 0.75 < z < 1.0 and 1.0 < z < 1.65. We find that the composite quasar spectra constructed by stacking the ELG-QSO pairs evolve with redshift, with z > 1 having a systematically higher signal of Mg II absorption. Within 1 Mpc, the covering fraction of the cool gas at z > 1 is higher than that of z < 1. The enhancement becomes less apparent especially if the projected distance r p > 1 Mpc. ELGs with higher stellar mass and star formation rate (SFR) yield higher clustering of Mg ii absorbers at z < 1. For z > 1, the covering fractions with different SFRs show little difference. The higher Mg II absorption at higher redshift supports the observations of higher star formation at cosmic noon. Converting the Mg II absorbers to unsaturated Si II , our estimate indicates that the metal abundance of Si II ranges from 0.7 to 1.2 × 10 −6 from z = 0.9 to 1.3. The growth of low-ionization metal abundance strongly suggests a metal-enriched circumgalactic medium and an increased presence of cool gas in the intergalactic medium toward higher redshifts.

circumgalactic medium↗

Development and construction status of the Mu2e electromagnetic calorimeter mechanical structures

Abstract The Mu2e experiment at Fermilab will search for the CLFV neutrino-less coherent conversion of a muon into an electron in the field of an aluminum nucleus. The observation of this process would be the evidence of physics beyond the Standard Model. Mu2e comprises a straw-tracker, an electromagnetic calorimeter and an external veto for cosmic rays. The calorimeter provides electron identification, a fast trigger and aids track reconstruction. It is a state-of-the-art crystal calorimeter and employs 1340 pure CsI crystals readout by UV-extended SiPM and fast electronics. The design consists of two identical annular disks positioned at the relative distance of 70 cm downstream the target.The hostile Mu2e conditions (total ionizing dose of 12 krad and a neutron fluence of 5 × 10 10 n/cm 2 @ 1 MeVeq (Si)/y, 1 T magnetic field and vacuum level of 10 −4 Torr) posed tight constraints on the mechanical structures and materials choice. The support structure of the two crystal matrices employs two aluminum hollow rings and parts made of open-cell vacuum-compatible carbon fiber. SiPMs and front-end electronics for each crystal are assembled in one mechanical unit inserted in a machined copper holder. The units are supported by a plate made of vacuum-compatible material. The plate integrates the cooling system made of a network of copper lines flowing a low temperature fluid and placed in thermal contact with the copper holders. The DAQ is hosted in aluminum crates positioned on the lateral surface of the disks. The crates also integrate the DAQ electronics cooling system. We review the constraints on the calorimeter structures design, the development of all the structural components, including the simulations that have determined the materials and technological choices and the specifications of the cooling station, components production and quality assurance tests, the procedures for detector assembly, transportation and installation in the experimental area.

Instruments & Instrumentation↗

Denial of Service Attack Detection via Differential Analysis of Generalized Entropy Progressions

Denial-of-Service (DoS) attacks are one the most common and consequential cyber attacks in computer networks. While existing research offers a plethora of detection methods, the issue of achieving scalability, a low false positive rate, and high detection accuracy remains open. In this work, we address this problem by developing a differential method based on generalized entropy progression. In this method, named as DoDGE, we continuously fit the line of best fit to the entropy progression of destination addresses and check if the derivative, that is, the slope of this line is less than the negative of the dynamically computed standard deviation of the derivatives. Furthermore, to distinguish from flash events, we leverage the symmetry that when a flash event occurs, the derivative of the entropy progression of source addresses is positive. With this design, we omit the usage of the thresholds and the results with five real-world network traffic datasets confirm that DoDGE outperforms threshold-based DoS attack detection by two orders of magnitude in terms of false positives on average. When compared to ten machine learning (ML) models, DoDGE achieves a balanced accuracy of 99%, while the average balanced accuracy for the ML models is 52%. Moreover, the results show that DoDGE successfully differentiates between a flash event and a DoS attack. Furthermore, since the main computation cost of DoDGE is the entropy computation, which is linear in the volume of the unit-time network flow, uses integer only operations, and works on a small fraction of the total flow, it is lightweight and scalable.

Cybersecurity, wireless communication↗

First-ever deployment of a SiPM-on-tile calorimeter in a collider: a parasitic test with 200 GeV p p collisions at RHIC.

We describe the testing of a prototype SiPM-on-tile iron-scintillator calorimeter at the Relativistic Heavy Ion Collider (RHIC) during its 200 GeV p p run in 2024. The prototype, measuring 20 × 20 cm 2 and 24 radiation lengths in depth, was positioned in the STAR experimental hall, approximately 8 m from the interaction point and 65 cm from the beam line, covering a pseudorapidity range of about 3.1 < η < 3.4. By using the dark current of a reference SiPM as a radiation monitor, we estimate that the prototype was exposed to a fluence of about 10 10 1-MeV n eq /cm 2 . Channel-by-channel calibration was performed in a data-driven way with the signature from minimum-ionizing particles during beam-on conditions. AGeant4 detector simulation, with inputs from thePythia8 event generator, describes measurements of energy spectra and hit multiplicities reasonably well. These results mark the first deployment, commissioning, calibration, and long-term operation of a SiPM-on-tile calorimeter in a collider environment. This experimental campaign will guide detector designs and operational strategies for the ePIC detector at the future EIC, as well as other applications.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Autonomous Hydrogen Fueling Station

This project “Autonomous Hydrogen Fueling Station” covered the autonomous refueling with both gaseous hydrogen and liquid hydrogen. The part on gaseous hydrogen focused on the development of an autonomous robotic fueling arm that would couple to a fuel cell engine for hydrogen refueling without guidance from the forklift operator and budget period. Research was also covered for the robotic fueling with a commercial vehicle. The second phase of the project created the baseline for an autonomous liquid hydrogen transfer system that would minimize boil off losses by operating at thermodynamically efficient state points. For the development of the robotic fueling arm, testing was conducted to establish a baseline measurement of the accuracy and repeatability of a human operator positioning a lift truck in front of a dispenser. The goal was to establish the range of motion required for an autonomous fueling mechanism to mate a hydrogen nozzle with a receptacle on a fuel cell system installed in a forklift. The final design comprised a selective compliance articulated robot arm (SCARA)-type mechanism with two arms for horizontal motion and a ball screw for vertical movement and color and LIDAR cameras were used for marker identification and proximity awareness to guide the robotic arm to its target receptacle. Initial tests resulted in 199 out of 200 successful attempts at autonomous coupling of the dispensing coupler and a fuel cell engine, without hydrogen. The dispenser prototype was modified to include tubing for both hydrogen fuel and air purge lines, but subsequent tests were confounded by the shoulder motor over current errors which limited the robot from getting to the fully inserted position to achieve a positive latch. Robotic hydrogen refueling was successfully demonstrated over 1.5 hours of testing, Plug completed 29 successful latches with an average number of 4 sequential latches before failure. However, a robot capable of placing the nozzle with more force is required for higher reliability. For budget period two, a small scale (10 kg / transfer) automated control system was designed that would operate valves to control pressure and flow of liquid nitrogen between a source and receiving tank with an aim to minimize boil off losses by operating at the most thermodynamically efficient state points. Control system logic flow and a P&ID were developed prior to system safety characterization via HAZOP. A control narrative and system state points were defined. Delays in approval for a change of project objective and procurement issues precluded the construction and test of the final prototype system.

08 HYDROGEN↗

Nanofiltration Membranes for Li + /Mg 2+ Separation: Materials and Mechanisms

Nanofiltration (NF) membranes have garnered significant interest for Li + /Mg 2+ separation, a crucial step in lithium extraction from brines. The state-of-the-art commercial LiNE-XD membrane exhibits a Li + /Mg 2+ separation factor (SF Li/Mg ) of 42 at pH 3.3, due to the positive charges on the membrane surface and its strong size-sieving ability. Membranes with higher separation factors at a broad pH range are being pursued to improve separation efficiency. This work aims to provide a timely and comprehensive assessment of advanced NF membranes with superior Li + /Mg 2+ separation properties, as well as their structure and property relationships for designing next-generation membranes. We describe transport mechanisms for ions in NF membranes and discuss governing parameters and models employed to quantify the Li + /Mg 2+ separation. High-performance membrane materials are exhaustively introduced, including commercial and modified polyamides, two-dimensional materials, metal–organic frameworks, crown ethers, and their blends. Finally, we critically compare these membranes in an upper bound plot and highlight the opportunities and challenges of NF membranes for practical Li + /Mg 2+ separations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Intracellular Biomacromolecule Delivery by Stimuli-Responsive Protein Vesicles Loaded by Hydrophobic Ion Pairing

Proteins can perform ideal therapeutic functions. However, their large size and significant surface hydrophilicity and charge prohibit them from reaching intracellular targets. These chemical features also render them poorly encapsulated by nanoparticles used for intracellular delivery. In this work, a novel combination of protein vesicles and hydrophobic ion pairing (HIP) was used to load protein cargo and achieve cytosolic delivery to overcome the limitations of previous protein vesicle properties. Protein vesicles are thermally self-assembling nanoparticles made from elastin-like polypeptide (ELP) fused to an arginine-rich leucine zipper and a globular protein fused to a glutamate-rich leucine zipper. To impart stimuli-responsive disassembly, physiological stability, and small size, the ELP sequence was modified to include histidine and tyrosine residues. HIP was used to load and release protein cargo requiring endosomal escape for cytosolic function. HIP vesicles enabled delivery of cytochrome c, a cytosolically active protein, and a significant reduction in viability in both a traditional two-dimensional (2D) human cancer cell line culture and a biomimetic three-dimensional (3D) organoid model of acute myeloid leukemia. By examining the uptake of positively and negatively charged fluorescent protein cargos loaded by HIP, this work revealed the necessity of HIP for cytosolic cargo delivery and how HIP loading influences protein vesicle self-assembly and disassembly using microscopy, small-angle X-ray scattering, and nanoparticle tracking analysis. HIP protein vesicles have the potential to broaden the use of intracellular proteins as therapeutics for various diseases and extend protein vesicles to deliver other biomacromolecules, as the strategy developed here resulted in the first cytosolic protein cargo delivery using protein vesicles.

59 BASIC BIOLOGICAL SCIENCES↗

A versatile high-speed x-ray microscope for sub-10 nm imaging

We have developed a next-generation scanning x-ray microscope RASMI (RApid Scanning Microscopy Instrument) for high-throughput tomographic imaging. RASMI is installed at the hard x-ray nanoprobe beamline at NSLS-II and is capable of manipulating 1D multilayer Laue lenses (MLLs) and 2D optics (both zone plates and monolithically assembled 2D MLLs). The sample scanning stage utilizes line-focusing interferometry as an encoder while performing fly-scanning data acquisition. The system can be configured for both position- and time-triggering modes during fly-scanning. The microscope demonstrated a detector-limited data acquisition rate of 1.25 kHz during ptychography measurements. The initial x-ray results yielded a sample-limited resolution of ∼6 nm in 2D. RASMI can be adopted for in-vacuum applications and is a foundation for the next-generation scanning microscopy systems to be developed and commissioned at NSLS-II.

36 MATERIALS SCIENCE↗

Erosion of tungsten marker layers in W7-X

In order to get first insight into net tungsten erosion in W7-X, tungsten (W) marker layers were exposed during the operational phase OP 1.2b at one position of the Test Divertor Unit (TDU), at 21 different positions of the inner heat shield, and at two scraper elements. The maximum tungsten erosion rate at the TDU strike line was 0.13 nm s -1 averaged over the whole campaign. The erosion was inhomogeneous on a microscopic scale, with higher erosion on ridges of the rough surface inclined towards the plasma and deposition of hydrocarbon layers in the recessed areas of the rough surface. The W erosion at the inner heat shield was below the detection limit of 3–6 × 10 12 W-atoms/cm 2 s, and all inner heat shield tiles were covered with a thin B/C/O layer with thickness in the range 2 × 10 17 –10 18 B + C atoms/cm 2 (about 20–100 nm B + C). W-erosion of the marker layers on the scraper elements was also below the detection limit.

Mayer, M↗

Lycoris - A large-area, high resolution beam telescope

We note that a high-resolution beam telescope is one of the most important and demanding infrastructure components at any test beam facility. Its main purpose is to provide reference particle tracks from the incoming test beam particles to the test beam users, which allows measurement of the performance of the device-under-test (DUT). LYCORIS, a six-plane compact beam telescope with an active area of ~ 10 x 10 cm 2 (extensible to 10 x 20 cm 2 ) was installed at the DESY II Test Beam Facility in 2019, to provide a precise momentum measurement in a 1 T solenoid magnet or to provide tracking over a large area. The overall design of Lycoris will be described as well as the performance of the chosen silicon sensor. The 25 μm pitch micro-strip sensor used for Lycoris was originally designed for the SiD detector concept for the International Linear Collider. It adopts a second metallization layer to route signals from strips to the bump-bonded KPiX ASIC and uses a wire-bonded flex cable for the connection to the DAQ and the power supply system. This arrangement eliminates the need for a dedicated hybrid PCB. Its performance was tested for the first time in this project. The system has been evaluated at the DESY II Test Beam Facility in several test-beam campaigns and has demonstrated an average single-point resolution of 7.07 μm.

47 OTHER INSTRUMENTATION↗

Laser and optical transport line for laser-based ion beam diagnostics and control in the SNS linear accelerator

We report our recent upgrade of the laser and optical transport line for the laser-based ion beam diagnostics (laser wire) system at the linear accelerator (linac) of the Spallation Neutron Source (SNS). A new light source based on diodepumped solid-state laser amplifiers has been developed to provide near diffraction-limited laser beam with a variety of pulse structures. The free-space optical transport line has been modified to include image relay optics with remote control, which greatly improved the laser beam quality and position stability at individual measurement stations. The upgraded system enables novel beam diagnostics/control capabilities including longitudinal profile measurement and high-energy proton beam extraction from the SNS linac.

Liu, Yun↗

Structure of puromycin-sensitive aminopeptidase and polyglutamine binding

Puromycin-sensitive aminopeptidase (E.C. 3.4.11.14, UniProt P55786), a zinc metallopeptidase belonging to the M1 family, degrades a number of bioactive peptides as well as peptides released from the proteasome, including polyglutamine. We report the crystal structure of PSA at 2.3 Å. Overall, the enzyme adopts a V-shaped architecture with four domains characteristic of the M1 family aminopeptidases, but it is in a less compact conformation compared to most M1 enzymes of known structure. A microtubule binding sequence is present in a C-terminal HEAT repeat domain of the enzyme in a position where it might serve to mediate interaction with tubulin. In the catalytic metallopeptidase domain, an elongated active site groove lined with aromatic and hydrophobic residues and a large S1 subsite may play a role in broad substrate recognition. The structure with bound polyglutamine shows a possible interacting mode of this peptide, which is supported by mutation.

59 BASIC BIOLOGICAL SCIENCES↗

Simple, compact, high-resolution monochromatic x-ray source for characterization of x-ray calorimeter arrays

X-ray calorimeters routinely achieve very high spectral resolution, typically a few eV full width at half maximum (FWHM). Measurements of calorimeter line shapes are usually dominated by the natural linewidth of most laboratory calibration sources. This compounds the data acquisition time necessary to statistically sample the instrumental line broadening and can add systematic uncertainty if the intrinsic line shape of the source is not well known. To address these issues, we have built a simple, compact monochromatic x-ray source using channel cut crystals. A commercial x-ray tube illuminates a pair of channel cut crystals that are aligned in a dispersive configuration to select the Kα1 line of the x-ray tube anode material. The entire device, including the x-ray tube, can be easily hand-carried by one person and may be positioned manually or using a mechanical translation stage. The output monochromatic beam provides a collimated image of the anode spot with magnification of unity in the dispersion direction (typically 100 μm–200 μm for the x-ray tubes used here) and is unfocused in the cross-dispersion direction so that the source image in the detector plane appears as a line. We measured output count rates as high as 10 count/s/pixel for the Hitomi soft x-ray spectrometer, which had 819 μm square pixels. We implemented different monochromator designs for energies of 5.4 keV (one design) and 8.0 keV (two designs), which have effective theoretical FWHM energy resolution of 0.125 eV, 0.197 eV, and 0.086 eV, respectively; these are well-suited for optimal calibration measurements of state-of-the art x-ray calorimeters. We measured an upper limit for the energy resolution of our Cr Kα1 monochromator of 0.7 eV FWHM at 5.4 keV, consistent with the theoretical prediction of 0.125 eV.

47 OTHER INSTRUMENTATION↗