Search NASA⌕ Search

SEARCH · Search NASA

Results for “Analytic linearization”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2016

PB-AM: An open-source, fully analytical linear poisson-boltzmann solver

Here, we present the open source distributed software package Poisson-Boltzmann Analytical Method (PB-AM), a fully analytical solution to the linearized PB equation, for molecules represented as non-overlapping spherical cavities. The PB-AM software package includes the generation of outputs files appropriate for visualization using visual molecular dynamics, a Brownian dynamics scheme that uses periodic boundary conditions to simulate dynamics, the ability to specify docking criteria, and offers two different kinetics schemes to evaluate biomolecular association rate constants. Given that PB-AM defines mutual polarization completely and accurately, it can be refactored as a many-body expansion to explore 2- and 3-body polarization. Additionally, the software has been integrated into the Adaptive Poisson-Boltzmann Solver (APBS) software package to make it more accessible to a larger group of scientists, educators, and students that are more familiar with the APBS framework.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2013

Evaluation of an analytic linear Boltzmann transport equation solver for high-density inhomogeneities

Purpose: Acuros external beam (Acuros XB) is a novel dose calculation algorithm implemented through the ECLIPSE treatment planning system. The algorithm finds a deterministic solution to the linear Boltzmann transport equation, the same equation commonly solved stochastically by Monte Carlo methods. This work is an evaluation of Acuros XB, by comparison with Monte Carlo, for dose calculation applications involving high-density materials. Existing non-Monte Carlo clinical dose calculation algorithms, such as the analytic anisotropic algorithm (AAA), do not accurately model dose perturbations due to increased electron scatter within high-density volumes. Methods: Acuros XB, AAA, and EGSnrc based Monte Carlo are used to calculate dose distributions from 18 MV and 6 MV photon beams delivered to a cubic water phantom containing a rectangular high density (4.0-8.0 g/cm{sup 3}) volume at its center. The algorithms are also used to recalculate a clinical prostate treatment plan involving a unilateral hip prosthesis, originally evaluated using AAA. These results are compared graphically and numerically using gamma-index analysis. Radio-chromic film measurements are presented to augment Monte Carlo and Acuros XB dose perturbation data. Results: Using a 2% and 1 mm gamma-analysis, between 91.3% and 96.8% of Acuros XB dose voxels containing greater than 50% the normalized dose were in agreement with Monte Carlo data for virtual phantoms involving 18 MV and 6 MV photons, stainless steel and titanium alloy implants and for on-axis and oblique field delivery. A similar gamma-analysis of AAA against Monte Carlo data showed between 80.8% and 87.3% agreement. Comparing Acuros XB and AAA evaluations of a clinical prostate patient plan involving a unilateral hip prosthesis, Acuros XB showed good overall agreement with Monte Carlo while AAA underestimated dose on the upstream medial surface of the prosthesis due to electron scatter from the high-density material. Film measurements support the dose perturbations demonstrated by Monte Carlo and Acuros XB data. Conclusions: Acuros XB is shown to perform as well as Monte Carlo methods and better than existing clinical algorithms for dose calculations involving high-density volumes.

61 RADIATION PROTECTION AND DOSIMETRY↗
DOE OSTI2025

Physics of beam-driven ion cyclotron emission in the large plasma device

Abstract Ion cyclotron emission (ICE) is widely observed from spatially localised minority energetic ion populations in toroidal magnetically confined fusion (MCF) plasmas, both tokamaks and stellarators. Its spectral structure is typically regular with narrow suprathermal peaks, whose frequency separation matches a local energetic ion cyclotron frequency. Here we report the first computational (fully nonlinear self-consistent kinetic particle-in-cell code) and analytical (linear magnetoacoustic cyclotron instability (MCI)) studies of ICE observations from cylindrical plasmas contained in the Large Plasma Device (LAPD). Because LAPD is cylindrical, the plasma physics giving rise to the observed ICE spectrum necessarily excludes toroidal effects. Our approach, previously successful for toroidal plasma ICE, assumes slab geometry and hence is well adapted to LAPD. ICE from LAPD is strongly electrostatic, as distinct from electromagnetic, and is driven by 15 keV beam ions for which the ratio of perpendicular speed to the local Alfven speed, v ⊥ / v A , is 0.15, lower than in MCF plasmas from which beam-driven ICE has previously been observed. Our results are in good agreement with these observations. There is congruence between simulated ICE spectra, obtained in the saturated nonlinear regime of our computations, and observed ICE spectra; the underlying physics is essentially the same as in toroidal plasmas; and there is alignment with linear analytical theory where appropriate. The present work establishes a mapping from the cylindrical LAPD ICE observations to toroidal MCF ICE observations. The LAPD spectra are instances of beam-driven MCI-type ICE in its sub-Alfvenic, predominantly electrostatic manifestation, which has precedents in MCF stretching back to the 1990s. An interesting corollary is that, for many purposes, ICE in toroidal MCF plasmas ‘might as well’ be occurring in a cylinder.

Samant, O. (ORCID:0000000226055363)↗
DOE OSTI2017

Scaling Up Data-Parallel Analytics Platforms: Linear Algebraic Operation Cases

Linear algebraic operations such as matrix manipulations form the kernel of many machine learning and other crucial algorithms. Scaling up as well as scaling out such algorithms are key to supporting large scale data analysis that require efficient processing over millions of data samples. To this end, we present, ARION, a hardware acceleration based approach for scaling-up individual tasks of Spark, a popular data-parallel analytics platform. We support both linear algebraic operations of between two dense matrices, and between sparse and dense matrices in distributed environments. ARION provides a flexible control of acceleration according to matrix density, along with efficient scheduling based on runtime resource utilization. We demonstrate the benefit of our approach for general matrix multiplication operations over large matrices with up to four billion elements by using Gramian matrix computation that is commonly used in machine learning. Experiments show that our approach achieves more than 2× and 1.5× end-to-end performance speedups for dense and sparse matrices, respectively, and up to 57.04× faster computation compared to MLlib, a state of the art Spark-based implementation. This work is sponsored in part by the NSF under the grants: CNS-1565314, CNS-1405697, and CNS-1615411. The manuscript has been authored by UT-Battelle, LLC under Contract No. DE-AC05-00OR22725 with the U.S. Department of Energy. The United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a non-exclusive, paid-up, irrevocable, world-wide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes. The Department of Energy will provide public access to these results of federally sponsored research in accordance with the DOE Public Access Plan (http://energy.gov/downloads/doe-public-access-plan). This research used resources of the Oak Ridge Leadership Computing Facility at the Oak Ridge National Laboratory, which is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC05-00OR22725.

Xu, Luna↗
DOE OSTI2014

Linear electrostatic waves in a three-component electron-positron-ion plasma

Analytical linear electrostatic waves in a magnetized three-component electron-positron-ion plasma are studied in the low-frequency limit. By using the continuity and momentum equations with Poisson's equation, the dispersion relation for the electron-positron-ion plasma consisting of cool ions, and hot Boltzmann electrons and positrons is derived. In the linear regime, the propagation of two possible modes and their evolution are studied. In the cases of parallel and perpendicular propagation, it is shown that these two possible modes are always stable. The present investigation contributes to nonlinear propagation of electrostatic waves in space and the laboratory.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2012

Selective Plasmonic Gas Sensing: H2, NO2, and CO Spectral Discrimination by a Single Au-CeO2 Nanocomposite Film

A Au-CeO2 nanocomposite film has been investigated as a potential sensing element for high-temperature plasmonic sensing of H2, CO, and NO2 in an oxygen containing environment. The CeO2 thin film was deposited by molecular beam epitaxy (MBE) and Au was implanted into the as-grown film at an elevated temperature followed by high temperature annealing to form well-defined Au nanoclusters. The Au-CeO2 nanocomposite film was characterized by x-ray diffraction (XRD) and Rutherford backscattering spectrometry (RBS). For the gas sensing experiments, separate exposures to varying concentrations of H2, CO, and NO2 were performed at a temperature of 500°C in oxygen backgrounds of 5.0, 10, and ~21% O2. Changes in the localized surface plasmon resonance (LSPR) absorption peak were monitored during gas exposures and are believed to be the result of oxidation-reduction processes that fill or create oxygen vacancies in the CeO2. This process affects the LSPR peak position either by charge exchange with the Au nanoparticles or by changes in the dielectric constant surrounding the particles. Multivariate analysis was used to gauge the inherent selectivity of the film between the separate analytes. From principal component analysis (PCA), unique and identifiable responses were seen for each of the analytes. Linear discriminant analysis (LDA) was also used and showed separation between analytes as well as trends in gas concentration. Results indicate that the Au-CeO2 thin film is selective to O2, H2, CO, and NO2 in separate exposures. Combined with the observed stability over long exposure periods, the Au-CeO2 film shows good potential as an optical sensing element for harsh environmental conditions.

36 MATERIALS SCIENCE↗
DOE OSTI2013

Simulation of linear and nonlinear Landau damping of lower hybrid waves

The linear physics of lower hybrid waves (LHWs) and their nonlinear interaction with particles through Landau damping are studied with the gyrokinetic electron and fully kinetic ion (GeFi) particle simulation model in the electrostatic limit. Unlike most other wave modes, the LHWs can resonantly interact with both electrons and ions, with the former being highly magnetized and latter nearly unmagnetized around the lower hybrid frequency. Direct interactions of LHWs with electrons and/or ions are investigated for cases with various k{sub ∥}/k,T{sub i}/T{sub e}, and wave amplitudes. In the linear electron Landau damping (ELD), the dispersion relation and the linear damping rate obtained from our simulation agree well with the analytical linear theory. As the wave amplitude increases, the nonlinear Landau effects are present, and a transition from strong decay at smaller amplitudes to weak decay at larger amplitudes is observed. In the nonlinear stage, the LHWs in the long time evolution finally exhibit a steady Bernstein-Greene-Kruskal mode, in which the wave amplitude is saturated above the noise level. While the resonant electrons are trapped in the wave field in the nonlinear ELD, the resonant ions are untrapped in the LHW time scales. The ion Landau damping is thus predominantly in a linear fashion, leading to a wave saturation level significantly lower than that in the ELD. On the long time scales, however, the ions are still weakly trapped. The results show a coupling between the LHW frequency and the ion cyclotron frequency during the long-time LHW evolution.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2024

Permutation-adapted complete and independent basis for atomic cluster expansion descriptors

Atomic cluster expansion (ACE) methods provide a systematic way to describe particle local environments of arbitrary body order. For practical applications it is often required that the basis of cluster functions be symmetrized with respect to rotations and permutations. Existing methodologies yield sets of symmetrized functions that are over-complete. These methodologies thus require an additional numerical procedure, such as singular value decomposition (SVD), to eliminate redundant functions. In this work, it is shown that analytical linear relationships for subsets of cluster functions may be derived using recursion and permutation properties of generalized Wigner symbols. From these relationships, subsets (blocks) of cluster functions can be selected such that, within each block, functions are guaranteed to be linearly independent. It is conjectured that this block-wise independent set of permutation-adapted rotation and permutation invariant (PA-RPI) functions forms a complete, independent basis for ACE. Along with the first analytical proofs of block-wise linear dependence of ACE cluster functions and other theoretical arguments, numerical results are offered to demonstrate this. The utility of the method is demonstrated in the development of an ACE interatomic potential for tantalum. Using the new basis functions in combination with Bayesian compressive sensing sparse regression, some high degree descriptors are observed to persist and help achieve high-accuracy models.

Angular momentum↗
DOE OSTI2014

An analytic model for buoyancy resonances in protoplanetary disks

Zhu et al. found in three-dimensional shearing box simulations a new form of planet-disk interaction that they attributed to a vertical buoyancy resonance in the disk. We describe an analytic linear model for this interaction. We adopt a simplified model involving azimuthal forcing that produces the resonance and permits an analytic description of its structure. We derive an analytic expression for the buoyancy torque and show that the vertical torque distribution agrees well with the results of the Athena simulations and a Fourier method for linear numerical calculations carried out with the same forcing. The buoyancy resonance differs from the classic Lindblad and corotation resonances in that the resonance lies along tilted planes. Its width depends on damping effects and is independent of the gas sound speed. The resonance does not excite propagating waves. At a given large azimuthal wavenumber k{sub y} > h {sup –1} (for disk thickness h), the buoyancy resonance exerts a torque over a region that lies radially closer to the corotation radius than the Lindblad resonance. Because the torque is localized to the region of excitation, it is potentially subject to the effects of nonlinear saturation. In addition, the torque can be reduced by the effects of radiative heat transfer between the resonant region and its surroundings. For each azimuthal wavenumber, the resonance establishes a large scale density wave pattern in a plane within the disk.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2018

Verification of 5D continuum gyrokinetic code COGENT: Studies of kinetic drift wave instability

COGENT (Continuum Gyrokinetic Edge New Technology) is a kinetic plasma simulation code that is being developed by the edge simulation laboratory (ESL) collaboration. The original version of the code has been developed in a 4D phase space (2D configuration space and 2D velocity space) to address kinetic plasma phenomena in a complex magnetic field geometry including the core, magnetic separatrix, and scrape-off layer regions. This paper is focused on extending the original 4D phase space to a 5D phase space (3D2V) to address full kinetic turbulences in a tokamak edge region. Here, we report on the current status of 5D COGENT, which presently operates in a shear-less, simple slab geometry. As a verification study, we use the problems of collision-less drift wave instability (universal instability) including its modification in the presence of collisional effects. The simulation model includes the gyrokinetic equations for ion and electron species coupled to the long-wavelength limit of the gyro-Poisson equation. Collisional effects are represented by the Krook collision model. Linear analytical results for the drift mode growth rate and real frequency are recovered, and the non-linear stage is modelled and analysed as well. In addition, extensive 5D runs have been performed to address the effects of the drift wave instability on blob/filamentary structures characteristic of a tokamak edge. Finally, a helical-shaped potential perturbation is observed to grow exponentially in time while spinning around the filament axis with electron drift frequency.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2012

Plasmonics Based Harsh Environment Compatible Chemical Sensors

Au-YSZ, Au-TiO 2 and Au-CeO 2 nanocomposite films have been investigated as a potential sensing element for high-temperature plasmonic sensing of H 2 , CO, and NO 2 in an oxygen containing environment. The Au-YSZ and Au-TiO 2 films were deposited using PVD methods, while the CeO 2 thin film was deposited by molecular beam epitaxy (MBE) and Au was implanted into the as-grown film at an elevated temperature followed by high temperature annealing to form well-defined Au nanoclusters. Each of the films were characterized by x-ray diffraction (XRD) and Rutherford backscattering spectrometry (RBS). For the gas sensing experiments, separate exposures to varying concentrations of H 2 , CO, and NO 2 were performed at a temperature of 500°C in oxygen backgrounds of 5.0, 10, and ~21% O 2 . Changes in the localized surface plasmon resonance (LSPR) absorption peak were monitored during gas exposures and are believed to be the result of oxidation-reduction processes that fill or create oxygen vacancies in the respective metal oxides. This process affects the LSPR peak position either by charge exchange with the Au nanoparticles or by changes in the dielectric constant surrounding the particles. Hyperspectral multivariate analysis was used to gauge the inherent selectivity of the film between the separate analytes. From principal component analysis (PCA), unique and identifiable responses were seen for each of the analytes. Linear discriminant analysis (LDA) was also used on the Au-CeO 2 results and showed separation between analytes as well as trends in gas concentration. Results indicate that each of the films are is selective towards O 2 , H 2 , CO, and NO 2 in separate exposures. However, when the films were analyzed in a sensor array based experiment, ie simultaneous exposures to the target gases, PCA analysis of the combined response showed an even greater selective character towards the target gases. Combined with the observed stability over long exposure periods, each of these Au-metal oxide films shows good potential as an optical sensing element for harsh environmental conditions.

47 OTHER INSTRUMENTATION↗
DOE OSTI2014

Relation between energetic and standard geodesic acoustic modes

Geodesic Acoustic Modes (GAMs) are electrostatic, axisymmetric modes which are non-linearly excited by turbulence. They can also be excited linearly by fast-particles; they are then called Energetic-particle-driven GAMs (EGAMs). Do GAMs and EGAMs belong to the same mode branch? Through a linear, analytical model, in which the fast particles are represented by a Maxwellian bump-on-tail distribution function, we find that the answer depends on several parameters. For low values of the safety factor q and for high values of the fast ion energy, the EGAM originates from the GAM. On the contrary, for high values of q and for low values of the fast ion energy, the GAM is not the mode which becomes unstable when fast particles are added: the EGAM then originates from a distinct mode, which is strongly damped in the absence of fast particles. The impact of other parameters is further explored: ratio of the ion temperature to the electron temperature, width of the fast particle distribution, mass and charge of the fast ions. The ratio between the EGAM and the GAM frequencies was found in experiments (DIII-D) and in non-linear numerical simulations (code GYSELA) to be close to 1/2: the present analytical study allows one to recover this ratio.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2015

KINETIC ALFVÉN WAVE GENERATION BY LARGE-SCALE PHASE MIXING

One view of the solar wind turbulence is that the observed highly anisotropic fluctuations at spatial scales near the proton inertial length d{sub p} may be considered as kinetic Alfvén waves (KAWs). In the present paper, we show how phase mixing of large-scale parallel-propagating Alfvén waves is an efficient mechanism for the production of KAWs at wavelengths close to d{sub p} and at a large propagation angle with respect to the magnetic field. Magnetohydrodynamic (MHD), Hall magnetohydrodynamic (HMHD), and hybrid Vlasov–Maxwell (HVM) simulations modeling the propagation of Alfvén waves in inhomogeneous plasmas are performed. In the linear regime, the role of dispersive effects is singled out by comparing MHD and HMHD results. Fluctuations produced by phase mixing are identified as KAWs through a comparison of polarization of magnetic fluctuations and wave-group velocity with analytical linear predictions. In the nonlinear regime, a comparison of HMHD and HVM simulations allows us to point out the role of kinetic effects in shaping the proton-distribution function. We observe the generation of temperature anisotropy with respect to the local magnetic field and the production of field-aligned beams. The regions where the proton-distribution function highly departs from thermal equilibrium are located inside the shear layers, where the KAWs are excited, this suggesting that the distortions of the proton distribution are driven by a resonant interaction of protons with KAW fluctuations. Our results are relevant in configurations where magnetic-field inhomogeneities are present, as, for example, in the solar corona, where the presence of Alfvén waves has been ascertained.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2015

Gyrokinetic study of the impact of the electron to ion heating ratio on the turbulent diffusion of highly charged impurities

A gyrokinetic study based on numerical and analytical calculations is presented, which computes the dependence of the turbulent diffusion of highly charged impurities on the ratio of the electron to the ion heat flux of the plasma. Nonlinear simulations show that the size of the turbulent diffusion of heavy impurities can vary by one order of magnitude with fixed total heat flux and is an extremely sensitive function of the electron to ion heat flux ratio. Numerical linear calculations are found to reproduce the nonlinear results. Thereby, a quasi-linear analytical approach is used to explain the origin of this dependence.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2016

Verification of the ideal magnetohydrodynamic response at rational surfaces in the VMEC code

The VMEC nonlinear ideal MHD equilibrium code [S. P. Hirshman and J. C. Whitson, Phys. Fluids 26, 3553 (1983)] is compared against analytic linear ideal MHD theory in a screw-pinch-like configuration. The focus of such analysis is to verify the ideal MHD response at magnetic surfaces which possess magnetic transform (ι) which is resonant with spectral values of the perturbed boundary harmonics. A large aspect ratio circular cross section zero-beta equilibrium is considered. This equilibrium possess a rational surface with safety factor q = 2 at a normalized flux value of 0.5. A small resonant boundary perturbation is introduced, exciting a response at the resonant rational surface. The code is found to capture the plasma response as predicted by a newly developed analytic theory that ensures the existence of nested flux surfaces by allowing for a jump in rotational transform (ι=1/q). The VMEC code satisfactorily reproduces these theoretical results without the necessity of an explicit transform discontinuity (Δι) at the rational surface. It is found that the response across the rational surfaces depends upon both radial grid resolution and local shear (dι/dΦ, where ι is the rotational transform and Φ the enclosed toroidal flux). Calculations of an implicit Δι suggest that it does not arise due to numerical artifacts (attributed to radial finite differences in VMEC) or existence conditions for flux surfaces as predicted by linear theory (minimum values of Δι). Scans of the rotational transform profile indicate that for experimentally relevant levels of transform shear the response becomes increasing localised. Furthermore, careful examination of a large experimental tokamak equilibrium, with applied resonant fields, indicates that this shielding response is present, suggesting the phenomena is not limited to this verification exercise.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2013

A density functional theory study of magneto-electric Jones birefringence of noble gases, furan homologues, and mono-substituted benzenes

We report on the results of a systematic ab initio study of the Jones birefringence of noble gases, of furan homologues, and of monosubstituted benzenes, in the gas phase, with the aim of analyzing the behavior and the trends within a list of systems of varying size and complexity, and of identifying candidates for a combined experimental/theoretical study of the effect. We resort here to analytic linear and nonlinear response functions in the framework of time-dependent density functional theory. A correlation is made between the observable (the Jones constant) and the atomic radius for noble gases, or the permanent electric dipole and a structure/chemical reactivity descriptor as the para Hammett constant for substituted benzenes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2014

Linear and nonlinear physics of the magnetoacoustic cyclotron instability of fusion-born ions in relation to ion cyclotron emission

The magnetoacoustic cyclotron instability (MCI) probably underlies observations of ion cyclotron emission (ICE) from energetic ion populations in tokamak plasmas, including fusion-born alpha-particles in JET and TFTR [Dendy et al., Nucl. Fusion 35, 1733 (1995)]. ICE is a potential diagnostic for lost alpha-particles in ITER; furthermore, the MCI is representative of a class of collective instabilities, which may result in the partial channelling of the free energy of energetic ions into radiation, and away from collisional heating of the plasma. Deep understanding of the MCI is thus of substantial practical interest for fusion, and the hybrid approximation for the plasma, where ions are treated as particles and electrons as a neutralising massless fluid, offers an attractive way forward. The hybrid simulations presented here access MCI physics that arises on timescales longer than can be addressed by fully kinetic particle-in-cell simulations and by analytical linear theory, which the present simulations largely corroborate. Our results go further than previous studies by entering into the nonlinear stage of the MCI, which shows novel features. These include stronger drive at low cyclotron harmonics, the re-energisation of the alpha-particle population, self-modulation of the phase shift between the electrostatic and electromagnetic components, and coupling between low and high frequency modes of the excited electromagnetic field.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗