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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 19 records

Quantitative Dissection of Agrobacterium Virulence to Generate a Synthetic Ti Plasmid

Agrobacterium is not only a costly plant pathogen but is also an essential tool for plant transformation. Though Agrobacterium-mediated transformation (AMT) has been heavily studied, its polygenic nature and complex transcriptional regulation make identification of the genetic basis of transformational efficiency difficult through traditional genetic and bioinformatic approaches. Here, we use a bottom-up synthetic approach to systematically engineer the tumor-inducing plasmid (pTi), wherein the majority of virulence machinery is encoded. Using a validated toolkit to control Agrobacterium gene expression in planta, we perform a quantitative dissection of AMT to investigate the contributions of critical vir-genes at different expression levels. We construct a synthetic pTi capable of transient plant and stable fungal transformation and characterize bottlenecks and solutions for complex polygenic synthetic pTi designs. Our reductionist approach demonstrates how bottom-up engineering can be used to dissect and elucidate the genetic underpinnings of complex biological traits, laying the foundation for future engineering to establish full synthetic control over the critical process of AMT.

Agrobacterium-mediated transformation↗

Causes and consequences of experimental variation in Nicotiana benthamiana transient expression

Infiltration of Agrobacterium tumefaciens into Nicotiana benthamiana has become a foundational technique in plant biology, enabling efficient delivery of transgenes in planta with technical ease, robust signal, and relatively high throughput. Despite transient expression’s prevalence in disciplines such as synthetic biology, little work has been done to describe and address the variability inherent in this system, a concern for experiments that rely on highly quantitative readouts. In a comprehensive analysis of N. benthamiana agroinfiltration experiments, we model sources of variability that affect transient expression. Our findings emphasize the need to validate normalization methods under the specific conditions of each study, as distinct normalization schemes do not always reduce variation either within or between experiments. Using a dataset of 1915 plants collected over three years, we develop a model of variation in N. benthamiana transient expression, using power analysis to determine the number of individual plants required for a given effect size. Drawing on our longitudinal data, these findings inform practical guidelines for minimizing variability through strategic experimental design and power analysis, providing a foundation for more robust and reproducible use of N. benthamiana in quantitative plant biology and synthetic biology applications.

Tang, Sophia N. [Joint BioEnergy Institute (JBEI),↗

First Results on the Search for Lepton Number Violating Neutrinoless Double-𝛽 Decay with the LEGEND-200 Experiment

The LEGEND Collaboration is searching for neutrinoless double-beta (0⁢𝜈⁢𝛽⁢𝛽) decay by operating high-purity germanium detectors enriched in 76 Ge in a low-background liquid argon environment. Building on key technological innovations from the GERmanium Detector Array (GERDA) experiment and the MAJORANA DEMONSTRATOR experiment, LEGEND-200 has performed a first 0⁢𝜈⁢𝛽⁢𝛽 decay search based on 61.0 kg yr of data. Over half of this exposure comes from our highest performing detectors, including newly developed inverted-coaxial detectors, and is characterized by an estimated background level of 0.5$^{+0.3}_{−0.2}$ ⁢cts/(keV ton yr) in the 0⁢𝜈⁢𝛽⁢𝛽 decay signal region. A combined analysis of data from GERDA, the MAJORANA DEMONSTRATOR, and LEGEND-200, characterized by a 90% confidence level exclusion sensitivity of 2.8 ×10 26 yr on the half-life of 0⁢𝜈⁢𝛽⁢𝛽 decay, reveals no evidence for a signal and sets a new observed lower limit at 𝑇$^{⁢0𝜈}_{1/2}$ > 1.9 × 10 26 yr (90% confidence level). Assuming the decay is mediated by Majorana neutrinos, this corresponds to an upper limit on the effective Majorana mass in the range 𝑚 𝛽⁢𝛽 < 75–200 meV, depending on the adopted nuclear matrix element.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Multiplicity and net-electric charge fluctuations in central Ar+Sc interactions at 13 A , 19 A , 30 A , 40 A , 75 A , and 150 A GeV/c beam momenta measured by NA61/SHINE at the CERN SPS

This paper presents results on multiplicity fluctuations of positively and negatively charged hadrons as well as net-electric charge fluctuations measured in central Ar+Sc interactions at beam momenta 13 A , 19 A , 30 A , 40 A , 75 A , and 150 A GeV/c. The fluctuation analysis is one of the tools to search for the predicted critical point of strongly interacting matter. Results are corrected for the experimental biases and quantified using cumulant ratios. In most instances, multiplicity and net-charge distributions appear narrower than the corresponding Poisson or Skellam distributions. Cumulant ratios are compared with the EPOS1.99 model predictions, which provide a qualitative description that aligns with observations for positively and negatively charged particles. The obtained results are also compared to earlier NA61/SHINE results from inelastic p+p interactions in the same analysis acceptance.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Demonstrating a butylamine-based deconstruction method for poplar biomass and conversion by diverse microbial strains

Low-boiling alkylamines such as butylamine offer promise as effective biomass pretreatment solvents that can be readily recovered and recycled; however, their capability to support microbial conversion of nutrients present in hydrolysates represents an important area for investigation. Here we employed butylamine to pretreat poplar biomass and characterize its effects on the release of fermentable sugars after solvent removal and enzymatic hydrolysis, as well as the biocompatibility of the produced hydrolysates with three organisms commonly used as bioconversion hosts. We observed that residual butylamine and the derivative butylacetamide were present in high enough concentrations to exert toxicity to strains of Aspergillus niger, Pseudomonas putida, and Rhodosporidium toruloides that produce malic acid, isoprenol and bisabolene, respectively. Removal of the toxic compounds by charcoal filtration and nutrient supplementation resulted in a hydrolysate containing >100 g L −1 of sugars that enabled strong growth, substrate consumption and bioproduct accumulation, outperforming defined cultivation media. This is the first demonstration of a butylamine-based deconstruction process for poplar biomass at a pilot-scale to achieve conversion of high sugar concentrations to valuable bioproducts with engineered microbes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Advances in ionic liquid recycling for lignocellulosic biomass pretreatment

Ionic liquids (ILs) are promising solvents for the pretreatment of lignocellulosic biomass due to their ability to disrupt cellulose, hemicellulose, and lignin structures. However, large-scale implementation requires the development of efficient recovery and recycling methods. This review provides a comprehensive analysis of the recyclability potential of ILs used in biomass pretreatment, emphasizing their mechanisms, recent innovations, and ongoing challenges. We begin by discussing the structural diversity and tunability of ILs, which underlie their effectiveness in biomass deconstruction. The distinct roles of IL anions and cations in dissolving specific biomass components are systematically presented and compared. Advances in IL recycling techniques, including antisolvent precipitation methods, membrane separation, and distillation, are critically examined, with attention to how mechanistic insights can inform the design of more efficient and selective recovery strategies. Despite progress, significant challenges remain to scaling up IL-based biomass processing, including high cost, environmental concerns, and impact of biomass-derived impurities (e.g., lignin residues, sugars, proteins) on IL purity and functionality after reuse. We also review the applicability of different ILs based on life cycle assessments and techno-economic analyses. Lastly, we identify critical research gaps and propose future directions, including the design and development of next-generation ILs with improved recyclability, reduced toxicity, and enhanced economic viability for industrial-scale applications.

36 MATERIALS SCIENCE↗

Feedstock-efficient conversion through hydrogen and formate-driven metabolism in Escherichia coli

Product yields for biomanufacturing processes are often constrained by the tight coupling of cellular energy generation and carbon metabolism in sugar-based fermentation systems. To overcome this limitation, we engineered Escherichia coli to utilize hydrogen gas (H 2 ) and formate (HCOO - ) as alternative sources of energy and reducing equivalents, thereby decoupling energy generation from carbon metabolism. This approach enabled precise suppression of decarboxylative oxidation during acetate growth, with 86.6 ± 1.6 % of electrons from hydrogen gas (via soluble hydrogenase from Cupriavidus necator H16) and 98.4 ± 3.6 % of electrons from formate (via formate dehydrogenase from Pseudomonas sp. 101) offsetting acetate oxidation. Hydrogen gas supplementation led to a titratable and stoichiometric reduction in CO 2 evolution in acetate-fed cultures. Metabolomic analysis suggests that this metabolic decoupling redirects carbon flux through the glyoxylate shunt, partially bypassing two decarboxylative steps in the TCA cycle. Here, we demonstrated the utility of this strategy by applying it to mevalonate biosynthesis, where formate supplementation during glucose fermentation increased titers by 57.6 % in our best-performing strain. Flux balance analysis further estimated that 99.0 ± 2.8 % of electrons from formate were used to enhance mevalonate production. These findings highlight a broadly applicable strategy for enhancing biomanufacturing efficiency by leveraging external reducing power to optimize feedstock and energy use.

Biomanufacturing↗

Rapid Evaluation of Amine-Functionalized Solvents for Biomass Deconstruction Using High-Throughput Screening and One-Pot Enzymatic Saccharification

Efficient and sustainable pretreatment of lignocellulosic biomass is critical for biofuel and biochemical production, yet its optimization is often hindered by slow, labor-intensive experimental methods. Here, we report the first demonstration of a custom-built, miniaturized, high-throughput screening platform integrated with one-pot enzymatic saccharification, enabling parallel evaluation of solvent type, feedstock, and temperature with minimal material use and high reproducibility. As a proof-of-concept, the HTX platform was used to screen five amine-functionalized solvents, including isopropanolamine, butylamine, N-methylbutylamine, ethanolamine, and ethanolamine acetate across three bioenergy crops (sorghum, poplar, and switchgrass) and pretreatment temperatures ranging from 80 to 140 °C. Vacuum drying successfully removed more than 99% of the solvents from the pretreated biomass, eliminating the need for water washing prior to saccharification. Isopropanolamine and N-methylbutylamine yielded the highest glucose (70–80%) and xylose (58–67%) release, with trends reflecting feedstock recalcitrance. The produced hydrolysates supported robust growth of an engineered strain of the yeast Rhodosporidium toruloides, confirming biocompatibility. This high-throughput platform provides a scalable, feedstock-agnostic framework for rapid pretreatment screening, accelerating solvent–feedstock pairing and process optimization. Its ability to integrate pretreatment, solvent removal, saccharification, and microbial conversion in a miniaturized format offers significant advantages for cost-competitive biorefinery development.

Biomass↗

Comparative genomics of Aspergillus nidulans and section Nidulantes

Aspergillus nidulans is an important model organism for eukaryotic biology and the reference for the section Nidulantes in comparative studies. In this study, we de novo sequenced the genomes of 25 species of this section. Whole-genome phylogeny of 34 Aspergillus species and Penicillium chrysogenum clarifies the position of clades inside section Nidulantes. Comparative genomics reveals a high genetic diversity between species with 684 up to 2433 unique protein families. Furthermore, we categorized 2118 secondary metabolite gene clusters (SMGC) into 603 families across Aspergilli, with at least 40 % of the families shared between Nidulantes species. Genetic dereplication of SMGC and subsequent synteny analysis provides evidence for horizontal gene transfer of a SMGC. Proteins that have been investigated in A. nidulans as well as its SMGC families are generally present in the section Nidulantes, supporting its role as model organism. The set of genes encoding plant biomass-related CAZymes is highly conserved in section Nidulantes, while there is remarkable diversity of organization of MAT-loci both within and between the different clades. This study provides a deeper understanding of the genomic conservation and diversity of this section and supports the position of A. nidulans as a reference species for cell biology.

Theobald, Sebastian [Technical University of Denma↗

Unsteady Land-Sea Breeze Circulations in the Presence of a Synoptic Pressure Forcing

Unsteady land-sea breezes (LSBs) that result from time-varying surface temperature contrasts Δθ(t) are explored in the presence of a constant synoptic pressure forcing, M g , oriented from sea to land (α = 0°) or land to sea (α = 180°). Large eddy simulations reveal the development of four distinctive regimes, depending on the joint interaction between M g , α, and Δθ(t) in modulating the fine-scale dynamics. Time lags, computed as the shifts that maximize correlation coefficients of the velocity between the unsteady and the corresponding steady scenarios at Δθ = Δθ max , are found to be significant and to extend 2 hr longer for α = 0° compared to α = 180°. These diurnal dynamics result in nonequilibrium conditions that are significantly affected by the flow history, and that behave differently over the two patches for the different α’s. Turbulence is found to be out of equilibrium with the mean flow, and the mean itself is found to be out of equilibrium with the thermal forcing. The sea surface heat flux is consistently more sensitive than its land counterpart to the time-varying external forcing Δθ(t), and more so for synoptic forcing from land to sea (α = 180°). Hence, although the land reaches equilibrium faster, the sea patch is found to exert a stronger control on the turbulence-mean flow equilibrium response. Finally, the vertical velocity profile at the shore and shore-normal velocity transects at the first grid level are shown to encode the multiscale regimes of the LSBs evolution and can thus be used to identify these regimes using k-means clustering.

58 GEOSCIENCES↗

Neutron stars in $$f(\mathtt {R,L_m})$$ gravity with realistic equations of state: joint-constrains with GW170817, massive pulsars, and the PSR J0030+0451 mass-radius from NICER data

Abstract In this work, we investigate neutron stars (NS) in $$f(\mathtt {R,L_m})$$ f ( R , L m ) theory of gravity for the case $$f(\mathtt {R,L_m})= \mathtt {R}+ \mathtt {L_m}+ \sigma \mathtt {R}\mathtt {L_m}$$ f ( R , L m ) = R + L m + σ R L m , where $$\mathtt {R}$$ R is the Ricci scalar and $$\mathtt {L_m}$$ L m the Lagrangian matter density. In the term $$\sigma \mathtt {R}\mathtt {L_m}$$ σ R L m , $$\sigma $$ σ represents the coupling between the gravitational and particles fields. For the first time the hydrostatic equilibrium equations in the theory are solved considering realistic equations of state and NS masses and radii obtained are subject to joint constrains from massive pulsars, the gravitational wave event GW170817 and from the PSR J0030+0451 mass-radius from NASA’s Neutron Star Interior Composition Explorer ( NICER ) data. We show that in this theory of gravity, the mass-radius results can accommodate massive pulsars, while the general theory of relativity can hardly do it. The theory also can explain the observed NS within the radius region constrained by the GW170817 and PSR J0030+0451 observations for masses around $$1.4~M_{\odot }$$ 1.4 M ⊙ .

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Evaluating isoprenol production using the IPP-bypass pathway in the oleaginous yeast Rhodosporidium toruloides

Background To strengthen the national energy supply, there is an increasing demand for domestically generated aviation fuels. Bio-derived advanced aviation fuels offer the opportunity to meet this domestic need while presenting a unique opportunity to investigate the production of novel aviation fuels. Isoprenol, a chemical precursor to such novel fuels, has been shown to be a biologically producible compound in model organisms, but its bio-producibility needs to be further explored in organisms more compatible with industrial bioproduction. Results In this work, we evaluate isoprenol production using the promising bioproduction yeast, Rhodosporidium toruloides. First, we show successful isoprenol production using the IPP-bypass pathways most successful in laboratory strains of E. coli and S. cerevisiae. Next, we demonstrate that increased flux through the mevalonate pathway only modestly increases isoprenol titers. Using proteomics, we identified a potential bottleneck in production at the final step in the IPP-bypass pathway and explored alternative enzymes for this step. Finally, the top three strains of R. toruloides were evaluated in sorghum hydrolysates generated using cholinium lysinate. Through this work, 93.1 mg/L of isoprenol was produced in mock medium and 27.3 mg/L in sorghum hydrolysates. Conclusion Together these results lay the foundation for future work for the production of isoprenol from bioproduction crops.

Advanced aviation fuel↗

Dark Energy Survey Year 3 Results: Cosmological constraints from second- and third-order shear statistics

Here, we present a cosmological analysis of the third-order aperture mass statistic using Dark Energy Survey Year 3 (DES Y3) data. We perform a complete tomographic measurement of the three-point correlation function of the Y3 weak lensing shape catalog with the four fiducial source redshift bins. Building upon our companion methodology paper, we apply a pipeline that combines the two-point function ξ ± with the mass aperture skewness statistic ⟨ M ap 3 ⟩ , which is an efficient compression of the full shear three-point function. We use a suite of simulated shear maps to obtain a joint covariance matrix. By jointly analyzing ξ ± and ⟨ M ap 3 ⟩ measured from DES Y3 data with a Λ CDM model, we find S 8 = 0.780 ± 0.015 and Ω m = 0.26 6 - 0.040 + 0.039 , yielding 111% of figure-of-merit improvement in the Ω m - S 8 plane relative to ξ ± alone, consistent with expectations from simulated likelihood analyses. With a w CDM model, we find S 8 = 0.74 9 - 0.026 + 0.027 and w 0 = - 1.39 ± 0.31 , which gives an improvement of 22% on the joint S 8 - w 0 constraint. Our results are consistent with w 0 = - 1 . Our new constraints are compared to CMB data from the Planck satellite, and we find that with the inclusion of ⟨ M ap 3 ⟩ the existing tension between the datasets is at the level of 2.3 σ . We show that the third-order statistic enables us to self-calibrate the mean photometric redshift uncertainty parameter of the highest redshift bin with little degradation in the figure of merit. Our results demonstrate the constraining power of higher-order lensing statistics and establish ⟨ M ap 3 ⟩ as a practical observable for joint analyses in current and future surveys.

Gomes, R. C. H. [University of Pennsylvania] (ORCI↗

Intrinsic charm and the 𝐷 + − 𝐷 − asymmetry produced in proton-proton collisions

We investigate the contribution of the charm-anticharm (𝑐⁢$\overline{𝑐}$) asymmetry of the proton eigenstate obtained from QCD lattice gauge to the asymmetry of 𝐷 + , 𝐷 − and 𝐷 0 , $\overline{𝐷}$ 0 mesons produced in 𝑝⁢𝑝 collisions at large Feynman variables 𝑥. It is shown that an important tool for establishing the intrinsic charm (IC) content of the proton is the charm hadron-antihadron asymmetry formed in 𝑝⁢𝑝 collisions. Predictions for the asymmetry as a function of 𝑥 for different IC probabilities are presented. We show that the interference of the intrinsic |𝑢⁢𝑢⁢𝑑⁢𝑐⁢$\overline{𝑐}$⟩ Fock state with the standard contribution from the perturbative QCD evolution leads to a large 𝐷 + ⁢𝐷 − asymmetry at large Feynman 𝑥.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Subsurface fluvial sediments beneath InSight on Mars from geophysical constraints

Subsurface structure investigation on Mars is crucial for understanding its geological evolution and past hydrological conditions. Elysium Planitia (EP), located near the hypothesized ancient ocean shorelines, could contain clues for past water activity and paleoclimate. Here we present better-constrained subsurface models beneath InSight extending to ~800 m depth, obtained from joint inversion of seismic and seismoacoustic coupling data, and use the well-resolved subsurface structure to explore the lithological profile through rock physics models. The derived subsurface lithology agrees well with local geological context and exhibits a shallow 60-m-thick low-rigidity layer consistent with hydrated sedimentary materials. Despite possible contributions of aeolian and volcanic deposits, we favor the interpretation that the low-rigidity layer originated from fluvial activity in EP during the Hesperian or Hesperian-to-Amazonian epoch, as supported by adjacent paleo-shoreline morphology observations. These results hint at a period of warmer paleoclimate at low latitudes, possibly during high-obliquity phases of Mars’ rotational axis.

58 GEOSCIENCES↗

Quantifying the impacts of micro- and mild- hybrid vehicle technologies on fleetwide fuel economy and electrification

Micro- and mild-hybridization (jointly labeled as M-HEV) is gaining popularity as a cost-effective technology for fuel economy improvement, but whether and how M-HEV may compete against less efficient conventional internal combustion engine vehicles (ICEV), more efficient full hybrid electric vehicles (HEV), and plug-in electric vehicles (PEV) is not well understood. As such, this study aims at evaluating the impact of the market adoption of M-HEV on the average fuel economy of the new vehicle fleet and on the sales share of PEVs. The study reviews recent sales trends and market forecasts, and uses published estimates of manufacturing cost and fuel economy of M-HEV with an existing discrete choice model (Market Acceptance of Advanced Automotive Technologies or MA3T) to project the market penetration and impacts of M-HEV under different scenarios of M-HEV choice positions, designed to enhance conclusion robustness. It is found that among engine-based powertrain choices, micro-HEV appears to be the most cost-effective, followed by ICEVs, mild-HEV and finally full HEVs. M-HEV technologies are likely to improve fleetwide average fuel economy without significant adverse effects on sales of plug-in electric vehicles, and are likely to remain highly competitive outside PEVs through 2050.

33 ADVANCED PROPULSION SYSTEMS↗