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32 examples of LLM applications in materials science and chemistry: towards automation, assistants, agents, and accelerated scientific discovery

Abstract Large language models (LLMs) are reshaping many aspects of materials science and chemistry research, enabling advances in molecular property prediction, materials design, scientific automation, knowledge extraction, and more. Recent developments demonstrate that the latest class of models are able to integrate structured and unstructured data, assist in hypothesis generation, and streamline research workflows. To explore the frontier of LLM capabilities across the research lifecycle, we review applications of LLMs through 32 total projects developed during the second annual LLM hackathon for applications in materials science and chemistry, a global hybrid event. These projects spanned seven key research areas: (1) molecular and material property prediction, (2) molecular and material design, (3) automation and novel interfaces, (4) scientific communication and education, (5) research data management and automation, (6) hypothesis generation and evaluation, and (7) knowledge extraction and reasoning from the scientific literature. Collectively, these applications illustrate how LLMs serve as versatile predictive models, platforms for rapid prototyping of domain-specific tools, and much more. In particular, improvements in both open source and proprietary LLM performance through the addition of reasoning, additional training data, and new techniques have expanded effectiveness, particularly in low-data environments and interdisciplinary research. As LLMs continue to improve, their integration into scientific workflows presents both new opportunities and new challenges, requiring ongoing exploration, continued refinement, and further research to address reliability, interpretability, and reproducibility.

Computer Science

Cement Plant TEA/LCA

This presentation was prepared for the 2024 Carbon Management Project Review Meeting. The slides summerize recent NETL systems analysis work examining the application of carbon capture systems at cement plants. This includes a 2023 NETL report titled "Analysis of Carbon Capture Retrofits for Cement Plants" and a 2024 NETL authored journal article titled “The Impact of Cement Plant Air Ingress on Membrane-Based CO2 Capture Retrofit Cost”. The slide deck also highlights ongoing NETL techno-economic analysis and lifecycle assessment work on capture from cement plants & other industrial capture projects.

Homsy, Sally

Integrating Safety, Security, and Nuclear Operations for Advanced Reactors

The traditional separation between safety, security, and operations teams has created significant barriers to achieving optimal outcomes. When security considerations are introduced late in the design process, they often conflict with already-established architectural, operational, or engineering parameters. Retrofitting security measures can lead to increased costs, schedule delays, and compromises in security effectiveness. For instance, the need to retrofit physical barriers or surveillance systems often results in trade-offs that could have been avoided with earlier input from security professionals. Delayed integration can also affect regulatory processes and result in licensing delays. Security reviews conducted at later stages frequently identify gaps that necessitate significant redesign efforts, impacting not only scope, schedule, and budget, but also adding risk and lowering stakeholder confidence in the project. This paper aims to address these challenges by identifying practical opportunities for integrating security considerations seamlessly with design and operations teams throughout the entire lifecycle of nuclear facilities—from conceptual design to commissioning and beyond. The research emphasizes the value of early and continuous collaboration among stakeholders to ensure that security measures are robust, operationally effective, and cost-efficient. By examining case studies, analyzing past incidents, and leveraging best practices from other high-security industries, this study highlights actionable strategies for bridging the gap between safety, security, and operations teams.

Zineddin, Dr. Z. [ORNL] (ORCID:0009000848740725)

Framework for a Digital Documented Safety Analysis

This framework is developed to progress the digital implementation of digital tools applied to the DOE authorization process, with future applications to NRC SAR development/review, to accelerate the design and review processes of advanced nuclear reactors. The engineering design and licensing process for nuclear reactors is currently burdened by a document-based approach that leads to duplications and errors due to a lack of traceability among numerous static documents. Changes to design information require labor-intensive manual tracing through these documents, creating a high potential for human error. The adoption of a digital ecosystem, utilizing a digital thread to link various aspects of project design and analysis, promises dynamic documentation generation, automatic updates, and error reduction. Model Based Definition (MBD) and Product Lifecycle Management (PLM) tools are central to this digital transformation.

22 GENERAL STUDIES OF NUCLEAR REACTORS

Direct Air Reactive Capture and Conversion for Utility-Scale Energy Storage (Final Report)

This final report for FEW0277 summarizes the work performed over the project performance period of October 2021 – March 2025. This project was funded under the “Reactive Capture and Conversion R&D” lab call released in FY2021. The goal of the project was to develop dual-function materials and process for capturing CO 2 from the atmosphere and converting it into CH 4 . The work was organized into four parallel tracks in 1) direct air capture materials synthesis and characterization, 2) catalysts for CO 2 conversion, 3) mechanistic investigations via ab initio simulations, and 4) process modeling, technoeconomic analysis, and lifecycle assessment. The project was split into two budget periods. The first budget period focused on development of amine-based materials, due to their known performance for CO 2 direct air capture and their potential to act synergistically with metal catalysts to enable a low-temperature methanation pathway. The second budget period focused on development of alkali-based materials and a simulated-moving-bed process for high conversion catalytic reduction of captured CO 2 to CH 4 . All project milestones were completed during the project performance period and are summarized in this report. Our work resulted in publication of eight peer-reviewed manuscripts, one patent application, and numerous presentations given at domestic and international conferences and invited academic department seminars.

03 NATURAL GAS

Application of quantitative risk assessment to address stakeholder questions in geologic carbon storage

Ambitious international greenhouse gas emissions reduction targets demand a rapid transformation to a low-carbon economy. This transformation includes the accelerated adoption of carbon dioxide (CO2) capture and storage (CCS) technology. However, as with any large-scale engineering enterprise, the widespread commercial-scale deployment of geologic carbon storage (GCS) raises important questions about technology and cost-effectiveness, safety, environmental risk, and long-term liability. Effectively assessing and managing risks and liability associated with GCS projects is a key technical need throughout the project life cycle-from site selection and permitting to monitoring design, operational risk management, and post-operational site closure. This presentation highlights recent advancements in tools for quantitative risk assessment, being developed by the National Risk Assessment Partnership (NRAP). NRAP is a multi-year, multinational laboratory research collaboration sponsored by the U.S. Department of Energy's Office of Fossil Energy and Carbon Management. Our focus will be on these tools' applications in addressing critical stakeholder questions related to supporting permitting to ensure secure and environmentally protective storage; designing effective and efficient monitoring plans; evaluating the effectiveness of remedial actions and risk management alternatives; and informing liability assessment and investment decisions. This paper will detail the key functionality of NRAP’s Open-Source Integrated Assessment Model (NRAP-Open-IAM), a computational framework for assessing leakage risk and containment assurance. This model features streamlined workflows for calculating leakage risk profiles, delineating risk-based area of review, and assessing contingency plans and post-injection site care requirements. ORION is an open-source, observation-based ensemble forecasting toolkit to help operators assess the seismic hazard at a carbon storage site. The State of Stress Analysis Tool (SOSAT), designed to assess subsurface stress conditions and evaluate geomechanical risk resulting from CO2 injection in an area of interest will also be presented. We will also introduce a prototype model to evaluate storage project costs and liability associated with risk management. The Technoeconomic and Liability Evaluation for Storage (TALES) model uses results from forecasts of leakage and induced seismicity risk to estimate the lifecycle cost of managing risk. Finally, a preliminary example of how the NRAP Risk-based Adaptive Monitoring Plan (RAMP) tool can be used to design efficient and effective site monitoring plans and estimate the detectability of fluid leakage will be provided. The relevance of these tools for addressing key stakeholder questions amidst uncertainty will be emphasized.

decision support

DeepLynx Ecosystem 2025

Poor data integration and governance continue to plague complex engineering projects, resulting in missed cost, schedule, and performance targets. Departments operate in isolated systems with manual data exchange, creating fragmented information that compounds errors and leads to significant delays and cost overruns. The DeepLynx ecosystem addresses these challenges through an open-source, modular data management platform that transforms fragmented project data into an integrated digital thread. Built on a federated microservice architecture, the ecosystem comprises seven specialized tools centered around DeepLynx Nexus, a unified data catalog with hierarchical organization and graph-based navigation capabilities. The ecosystem includes: DeepLynx Stream for real-time timeseries data ingestion from industrial sources; DeepLynx Ingest for governed data uploads with formal review workflows; DeepLynx Lattice for ontology-based entity and relationship extraction; DeepLynx Run for workflow orchestration and secure AI/ML compute; DeepLynx Visualize for 3D digital twin visualization; and DeepLynx Insight for AI-assisted document analysis with traceable, grounded responses. Deployable in cloud, on-premise, or hybrid environments using containerized Docker applications and Helm charts, the DeepLynx ecosystem provides flexible infrastructure that adapts to organizational requirements. By consolidating project data into a unified data lake with role-based access controls and OAuth2 authentication, DeepLynx enables digital thread and digital twin capabilities that improve decision-making, reduce risk, and support complex engineering workflows throughout the project lifecycle.

42 - ENGINEERING

Qualitative Risk Assessment of Legacy Wells within the Estimated Prairie State Generating Company Area of Review

This report details the digitization of a legacy wellbore database, including data processing assumptions, parameter estimation, and risk assessment methodology. The database, comprising 6,454 documents, was provided by ISGS. It includes valuable data from the Prairie State Generating Company (PSGC) and One Earth Energy (OEE) sites of the CarbonSAFE Phase III – Illinois Storage Corridor project. The report focuses on wells within a 15-mile radius from the Lively Grove #1 (LG#1) well at PSGC site, evaluating subsurface conditions and potential risks. A total of 4,386 wellbores within 15 miles of the LG#1 well were filtered based on depth and formation codes. LG#1 is the stratigraphic well at the PSGC site drilled in 2021. Ninety-four (94) wells penetrating the Maquoketa Shale Group (the primary confining unit) within the estimated area-of-review (AoR) for the PSGC site were evaluated using a qualitative risk assessment (QRA) methodology. The QRA developed by Arbad et al. 2022 focuses on legacy wells within the AoR and categorizes them based on well construction details. The QRA identifies wells that need immediate attention by categorizing them based on penetration depth and protection. Wells within the AoR were categorized into nine groups based on penetrations and protections. These categories range from Type 1 wells, with no documentation, to Type 9 wells, which do not penetrate the primary confining unit or storage reservoir (unit). Well accessibility within the AoR varies based on well status, including Dry & Abandoned (DA), Plugged & Abandoned (PA), Injection (INJ), Oil/Gas Producing (PROD), and Observation (Obs) wells. Accessibility levels were determined by well construction, with DA wells being the least accessible and Observation wells the most accessible, impacting gas leakage detection possibilities. Remedial action priority of wells decreases from Type 1 to Type 9 wells. Type 1 to Type 6 wells with status DA and PA require immediate attention, while Type 7 and Type 8 wells are low priority. A risk matrix used to prioritize corrective actions for legacy wells is proposed to categorize wells within an AoR based on penetrations, protections, and accessibility. The methodology involves data acquisition, well categorization into nine types, and determining CO 2 leakage pathways using well schematics and geospatial mapping. This approach is particularly useful for managing the integrity of legacy wells throughout the lifecycle of a Carbon Capture and Storage (CCS) project. A qualitative risk assessment of 94 wells within the AoR of the PSGC site identified 54 wells with high priority for corrective action due to penetration of the primary containment seal. The assessment utilizes color-coded maps to categorize well types and prioritize corrective actions, providing a comprehensive analysis. Schematics of wells penetrating the primary confining unit were drawn, and leakage pathways were identified. Details of all wells penetrating the confining zone are provided in the appendix, including information on well types, plugging, and casing status.

01 COAL, LIGNITE, AND PEAT