On-line plasma FIB for x-ray microscopy mesoscale analysis
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36 MATERIALS SCIENCE↗
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Results for “mesoscale analysis”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Enhance Low Level Temperature and Moisture Profiles Through Combining NUCAPS, ABI Observations, and RTMA Analysis
Thermodynamic information from low levels in the atmosphere is crucial for operational weather forecasts and meteorological researchers. The NOAA Unique Combined Atmospheric Processing System (NUCAPS) sounding products have been proven beneficial to fill the data gap between synoptic radiosonde observations (RAOBs). However, compared with the upper troposphere, the accuracy of NUCAPS soundings in the low levels still needs improvement. In this study, a deep neural network (DNN) is applied to fuse multiple data sources to enhance the NUCAPS temperature and moisture profiles in the lower atmosphere. The network is developed by combining satellite observations, including NUCAPS sounding retrievals and high resolution geostationary satellite observations from the Advanced Baseline Imager, and surface analysis from the Real-Time Mesoscale Analysis (RTMA) as inputs, while collocated soundings from ECMWF re-analysis version 5 are used as the benchmark for the training. The performance of the model is evaluated by using the independent testing data set, data from a different year, as well as collocated RAOBs, showing improvement to the temperature and moisture profiles by reducing the root-mean-squared-error (RMSE) by more than 30% in the lower atmosphere (from 700 hPa to surface) in both clear sky and partially cloudy conditions. A convective event from June 18, 2017 is presented to illustrate the application of the enhanced low level soundings on high impact weather events. The enhanced soundings from fused data capture the large surface-based convective available potential energy structures in the preconvection environment, which is very useful for severe storm nowcasting and forecasting applications.
54 ENVIRONMENTAL SCIENCES↗
Turbulence and Cloudiness in Cumulus-Topped Marine Boundary Layers
Turbulence and cloudiness in cumulus-topped marine boundary layers are studied using data from the Atmospheric Radiation Measurement (ARM) Eastern North Atlantic (ENA) site. The analysis includes eight periods of nonprecipitating shallow cumulus clouds, spanning 141 h and encompassing 603 individual clouds. On average, the cumulus had bases at 558 m, were 99 m thick, had a chord length of 500 m, and exhibited an hourly base-layer cloudiness of 12%. Changes in cloud fraction were primarily driven by variations in cloud number not chord length. High-resolution Doppler lidar and cloud radar observations were used to estimate updraft and downdraft mass fluxes in the cumulus base layer under both clear and cloudy regions. Cloudy updrafts contributed only ∼23% of the total updraft mass flux at cloud base, indicating that most upward mass flux originated from clear-air eddies. Updraft strength, rather than updraft fraction, was found to predominantly control both clear and cloudy updraft mass fluxes. Cloud-base cloudiness strongly correlated with cloudy updraft mass flux but showed negligible correlation with clear-air updraft mass flux. Clear-air downdraft mass flux exhibited a strong relationship with the ratio of surface buoyancy to inversion strength. Mesoscale analysis revealed that moist patches had greater cloudiness, updraft mass flux, and vertical velocity variance compared to dry patches. Additionally, mesoscale base-layer cloud fraction was highly and significantly correlated with cloudy updraft mass flux in both dry and moist environments. Results presented herein have implications for cumulus parameterization development along with climatological and model evaluation studies conducted at the ENA site.
cumulus clouds↗
Mechanistic Analysis of Microstructural Attributes to Lithium Plating in Fast Charging
Metallic lithium deposition on graphite anodes is a critical degradation mode in lithium-ion batteries, which limits safety and fast charge capability. A conclusive strategy to mitigate lithium deposition under fast charging yet remains elusive. Herein, we examine the role of electrode microstructure in mitigating lithium plating behavior under various operating conditions, including fast charging. The multilength scale characteristics of the electrode microstructure lead to a complex interaction of transport and kinetic limitations that significantly governs the cell performance and the occurrence of Li plating. We demonstrate, based on a comprehensive mesoscale analysis, that the performance and degradation can be significantly modulated via systematic design improvements at the hierarchy of length scales. It is found that the improvement in kinetic and transport characteristics achievable at disparate scales can dramatically affect Li plating propensity.
25 ENERGY STORAGE↗
Structural analyses of macromolecules by solution scattering (CRADA Final Report)
New innovative Small Angle X-ray Scattering (SAXS) methods to visualized macromolecules in solution at low resolution has led the SIBYLS group at Lawrence Berkeley Lab in being a world leader in biological SAXS. This research is particularly important now as LBNL establishes high-priority research topics including molecular to mesoscale analysis. This new expanding area of research relies on and ties in with our efforts towards developing a solution structure modeling tool for RNA structure prediction. Due to the pandemic our efforts focused on the SARS-CoV-2 proteins and RNA interactions. Specifically, we characterized SARS-CoC-2 proteins interaction with RNA (Wilanowski et al. 2021 -Hammel group) and Nucleoprotein interaction with RNA (Schneidman group).
59 BASIC BIOLOGICAL SCIENCES↗
Integrated Multi-Sensor Imaging and Analysis Platform for Nano to Mesoscale Measurements of Nuclear Material
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37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
A Constrained Data Assimilation Algorithm Based on GSI Hybrid 3D-EnVar and Its Application
Abstract Data assimilation (DA) at mesoscales is important for severe weather forecasts, yet the techniques of data assimilation at this scale remain a challenge. This study introduces dynamical constraints in the Gridpoint Statistical Interpolation (GSI) three-dimensional ensemble variational (3D-EnVar) data assimilation algorithm to enable the use of high-resolution surface observations of precipitation to improve atmospheric analysis at mesoscales. The constraints use the conservations of mass and moisture. Mass constraint suppresses the unphysical high-frequency oscillation, while moisture conservation constrains the atmospheric states to conform with the observed high-resolution precipitation. We show that the constrained data assimilation (CDA) algorithm significantly reduced the spurious residuals of the mass and moisture budgets compared to the original data assimilation (ODA). A case study is presented for a squall line over the Southern Great Plains on 20 May 2011 during Midlatitude Continental Convective Clouds Experiment (MC3E) of the Atmospheric Radiation Measurement (ARM) program by using ODA or CDA analysis as initial condition of forecasts. The state variables, and the location and intensity of the squall line are better simulated in the CDA experiment. Results show how surface observation of precipitation can be used to improve atmospheric analysis through data assimilation by using the dynamical constraints of mass and moisture conservations.
Wang, Jia↗
Wavelet Analysis of Properties of Marine Boundary Layer Mesoscale Cells Observed From AMSR–E
Marine boundary layer clouds tend to organize into closed or open mesoscale cellular convection (MCC). Here, two-dimensional wavelet analysis is applied for the first time to passive microwave retrievals of cloud water path (CWP), water vapor path (WVP), and rain rate (RR) from Advanced Microwave Scanning Radiometer for Earth Observing System in 2008 over the Northeast and Southeast Pacific, and the Southeast Atlantic subtropical stratocumulus to cumulus transition regions. The (co-)variability between CWP, WVP, and RR in 160 × 160 km 2 analysis boxes is partitioned between four mesoscale wavelength octaves (20, 40, 80, and 160 km). The cell scale is identified as the wavelength of the peak CWP variance. Together with a machine-learning classification of cell type, this allows the statistical characteristics of open and closed MCC of various scales, and its relation to WVP, RR, and potential environmental controlling factors to be analyzed across a very large set of cases. Here, the results show that the cell wavelength is most commonly 40–80 km. Cell-scale CWP perturbations are good predictors of the WVP and RR perturbations. For cells larger than 20 km, there is no obvious dependence of cell scale on the environmental controlling factors tested, suggesting that the cell scale may depend more on its historical evolution than the current environmental conditions.
54 ENVIRONMENTAL SCIENCES↗
Mechanical Behavior of Additively Manufactured Molybdenum and Fabrication of Microtextured Composites
Refractory metals are a class of high-melting-temperature materials suitable for use in extreme environment applications. Interestingly, during additive manufacturing many pure refractory metals exhibit a switch from (001) to (111) build direction fiber preference with increasing surface energy density. Here we exploit this solidification physics to fabricate material with “mesoscale composite” engineered structures consisting of features with contrasting (001) and (111) build direction microtextures. Separately, elevated temperature tensile testing of EBM fabricated material with a randomized distribution of mixed (001)/(111)-fiber grains is shown to exhibit excellent properties. These results are utilized to build a crystal plasticity model for evaluating the local inelastic response of the composite mesoscale structures. Analysis of printed microstructures and microstructure-scale simulations indicate that both macro-scale and localized material behavior may be tailored. This strategy can be potentially used to synthesize materials with optimized performance for high-temperature applications.
36 MATERIALS SCIENCE↗
Soft X-ray tomography to map and quantify organelle interactions at the mesoscale
Inter-organelle interactions are a vital part of normal cellular function; however, these have proven difficult to quantify due to the range of scales encountered in cell biology and the throughput limitations of traditional imaging approaches. Here, we demonstrate that soft X-ray tomography (SXT) can be used to rapidly map ultrastructural reorganization and inter-organelle interactions in intact cells. SXT takes advantage of the naturally occurring, differential X-ray absorption of the carbon-rich compounds in each organelle. Specifically, we use SXT to map the spatiotemporal evolution of insulin vesicles and their co-localization and interaction with mitochondria in pancreatic β cells during insulin secretion and in response to different stimuli. We quantify changes in the morphology, biochemical composition, and relative position of mitochondria and insulin vesicles. These findings highlight the importance of a comprehensive and unbiased mapping at the mesoscale to characterize cell reorganization that would be difficult to detect with other existing methodologies.
3D cell mapping↗
The Role of Local Inhomogeneities on Dendrite Growth in LLZO-Based Solid Electrolytes
The majority of the ceramic solid electrolytes (LLZO, LATP) demonstrate polycrystalline grain/grain-boundary (G/GB) microstructure. Higher lithium (Li) concentration and lower mechanical stiffness result in current focusing at the GBs. Growth of Li dendrites through local inhomogeneities and subsequent short circuit of the cell is a major concern. Recent studies have revealed that bulk Li metal is a viscoplastic material that has low (~0.3 MPa) and high (~1.0 MPa) yield strength during deformation at smaller and larger rates of strain, respectively. It has been argued that during deposition at smaller current densities, due to its lower yield strength, Li metal should demonstrate plastic flow against stiff ceramic electrolytes, and Li dendrites will be prevented from penetrating through solid electrolytes. In this manuscript, a multiscale modeling framework has been developed for predicting properties of GBs and the bulk of ceramic electrolytes using atomistic calculations for input to mesoscale models. Using the parameters obtained from the atomistic simulations, the mesoscale model reveals that, given enough time, even at low charge rates, lithium dendrites can grow through the GBs of LLZO. The present multiscale model results also provide information regarding the dendrite growth velocity through LLZO.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Structure of Sulfuric Acid Solutions Using Pair Distribution Function Analysis
Solvation and mesoscale ordering of sulfuric acid and other strong acid solutions leads to suppressed freezing points and strong rheological changes with varying concentration. While the solid-state structures are well-understood, studies focused on the evolving solvation structure in the solution phase have probed a limited concentration range (~1–6 M). This study applies a total scattering approach in both the wide-angle X-ray scattering (WAXS) and pair distribution function (PDF) regimes to elucidate the evolving solvation structure over its full range of acid concentration (0–18 M). The emergence of a prepeak in the WAXS regime at intermediate concentrations indicates a transition from noninteracting sulfate molecules in the dilute limit to sterically limited sulfates at concentrations near its deep eutectic point. Fits to the PDF data quantify this trend, showing a transition from octahedrally hydrated sulfates up to 6–7 M concentrations, followed by gradual dehydration, and eventually reaching a solution structure similar to that of water-in-salt electrolyte systems at high acid concentrations.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Toward Understanding the Differences between Mesoscale and Large-Eddy Simulations of Tropical Cyclones
In this work, we investigate the ability of mesoscale and large-eddy simulation (LES) model configurations to predict the mean wind speed profile within the boundary layer of tropical cyclones (TCs). To this end, we perform idealized simulations of five hypothetical intense storms ranging from categories 1 to 5 on the Saffir–Simpson scale and extract time-averaged quantities near the eyewall region. We compare the model-generated data against mean wind speed profiles compiled from dropsondes launched from reconnaissance aircraft operating in the North Atlantic basin. Our analysis shows that mesoscale- and LES-generated mean wind fields display important differences in the boundary layer, including the magnitude of shear as well as the height where their low-level wind speed maxima are located. In addition, a comparison between the two model configurations with the dropsonde data shows that both modeling approaches are unable to capture the typical structure of mean winds in the lower part of the TC boundary layer (10–500 m), calling into question the use of simulations of near-axisymmetric storms for investigating the wind structure of past events. To better understand these differences, we conduct a momentum-budget analysis and show that modeled turbulent fluxes are underestimated in the mesoscale boundary layer parameterization compared to the LES model. Based on the analysis of the horizontal turbulent fluxes and their potential impact on mean flow quantities, a TC-specific boundary layer parameterization may be needed.
17 WIND ENERGY↗
Sensitivity Analysis of Wind and Turbulence Predictions With Mesoscale‐Coupled Large Eddy Simulations Using Ensemble Machine Learning
Abstract Coupling between mesoscale models and large‐eddy simulation (LES) models is increasingly used to more realistically represent the wide range of scales of atmospheric motions affecting boundary layer winds and turbulence that need to be simulated accurately for applications such as wind energy. However, such mesoscale‐to‐microscale coupled modeling frameworks are potentially affected by a large number of uncertain closure parameters. Here, we investigate the sensitivity associated with six closure parameters related to a 1.5‐order subgrid‐scale turbulence closure for an ensemble of mesoscale‐coupled LES. The simulations are performed using the Weather Research and Forecasting model nested from horizontal resolutions of greater than a kilometer down to tens of meters. Closure parameters are varied to generate perturbed parameter ensembles for two case studies of highly sheared, convective boundary layers observed in the Columbia Basin of Oregon and Washington during the Second Wind Forecast Improvement Project. Machine learning algorithms are used to explore the sensitivity of LES predictions, considering the effects of the perturbed physical parameters alongside categorical factors such as the case study identity, measurement location, and LES resolution. For the conditions we examine, a single parameter, the eddy viscosity coefficient, is the dominant source of parametric sensitivity and its importance is comparable to the categorical factors for several of the simulation response variables we examine.
54 ENVIRONMENTAL SCIENCES↗
A Multi-Platform In Situ Kinematic and Microphysical Analysis of a Hybrid Parallel–Trailing Stratiform Mesoscale Convective System
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54 ENVIRONMENTAL SCIENCES↗
Synchrotron infrared nano-spectroscopy and -imaging
Infrared (IR) spectroscopy has evolved into a powerful analytical technique to probe molecular and lattice vibrations, low-energy electronic excitations and correlations, and related collective surface plasmon, phonon, or other polaritonic resonances. In combination with scanning probe microscopy, near-field infrared nano-spectroscopy and -imaging techniques have recently emerged as a frontier in imaging science, enabling the study of complex heterogeneous materials with simultaneous nanoscale spatial resolution and chemical and quantum state spectroscopic specificity. Here, we describe synchrotron infrared nano-spectroscopy (SINS), which takes advantage of the low-noise, broadband, high spectral irradiance, and coherence of synchrotron infrared radiation for near-field infrared measurements across the mid- to far-infrared with nanometer spatial resolution. This powerful combination provides a qualitatively new form of broadband spatio-spectral analysis of nanoscale, mesoscale, and surface phenomena that were previously difficult to study with IR techniques, or even any form of micro-spectroscopy in general. We review the development of SINS, describe its technical implementations, and highlight selected examples representative of the rapidly growing range of applications in physics, chemistry, biology, materials science, geology, and atmospheric and space sciences.
47 OTHER INSTRUMENTATION↗
Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action
The severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) replication transcription complex (RTC) is a multi-domain protein responsible for replicating and transcribing the viral mRNA inside a human cell. Attacking RTC function with pharmaceutical compounds is a pathway to treating COVID-19. Conventional tools, e.g., cryo-electron microscopy and all-atom molecular dynamics (AAMD), do not provide sufficiently high resolution or timescale to capture important dynamics of this molecular machine. Consequently, we develop an innovative workflow that bridges the gap between these resolutions, using mesoscale fluctuating finite element analysis (FFEA) continuum simulations and a hierarchy of AI-methods that continually learn and infer features for maintaining consistency between AAMD and FFEA simulations. We leverage a multi-site distributed workflow manager to orchestrate AI, FFEA, and AAMD jobs, providing optimal resource utilization across HPC centers. Our study provides unprecedented access to study the SARS-CoV-2 RTC machinery, while providing general capability for AI-enabled multi-resolution simulations at scale.
Trifan, Anda↗
Electrode Mesoscale as a Collection of Particles: Coupled Electrochemical and Mechanical Analysis of NMC Cathodes
Battery electrodes are composed of polydisperse particles and a porous, composite binder domain. These materials are arranged into a complex mesostructure whose morphology impacts both electrochemical performance and mechanical response. We present image-based, particle-resolved, mesoscale finite element model simulations of coupled electrochemical-mechanical performance on a representative NMC electrode domain. Beyond predicting macroscale quantities such as half-cell voltage and evolving electrical conductivity, studying behaviors on a per-particle and per-surface basis enables performance and material design insights previously unachievable. Voltage losses are primarily attributable to a complex interplay between interfacial charge transfer kinetics, lithium diffusion, and, locally, electrical conductivity. Mesoscale heterogeneities arise from particle polydispersity and lead to material underutilization at high current densities. Particle-particle contacts, however, reduce heterogeneities by enabling lithium diffusion between connected particle groups. While the porous composite binder domain (CBD) may have slower ionic transport and less available area for electrochemical reactions, its high electrical conductivity makes it the preferred reaction site late in electrode discharge. Mesoscale results are favorably compared to both experimental data and macrohomogeneous models. This work enables improvements in materials design by providing a tool for optimization of particle sizes, CBD morphology, and manufacturing conditions.
42 ENGINEERING↗