Trimmed sampling algorithm for the noisy generalized eigenvalue problem
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The Japanese space agency's (JAXA) Hayabusa mission returned the first particulate samples (typically <100micron) from the surface of an asteroid (25143 Itokawa). These precious samples provide important insights into early Solar System processes, but their sizes pose tremendous challenges to coordinated analysis using a variety of nano- and micro-beam techniques. The ability to glean maximal information from individual particles has become increasingly important and depends critically on sample preparation. We developed a hybrid technique combining traditional ultramicrotomy with focused ion beam (FIB) techniques, allowing for more thorough in situ investigations of grain surfaces and interiors. Using this method, we increase the number of FIB-prepared sections that can be recovered from a particle with dimensions on the order of tens of microns. These sections can be subsequently analyzed using a variety of analytical techniques. Particle RA-QD02-0211 is a approx. 40×40×20 micron particle from Itokawa containing olivine and Fe sulfides. It was embedded in low viscosity epoxy and partly sectioned to a depth of approx 10 micron; sections are placed on Cu grids with thin amorphous films for transmission electron microscope (TEM) analyses. With the sample surface partly exposed, the epoxy bullet is trimmed to a height of approx. 5mm to accommodate the allowable dimensions for FIB work (FEI Quanta 600 3D dual beam FIB-SEM). Using a diamond trim knife, the epoxy surrounding the grain is removed on 3 sides (to within a few microns of the grain); the depth of material removed extends well below the bottom of the particle. The sample is attached to an SEM pin mount, the epoxy coated with conductive paint, and the entire assembly coated with approx. 40nm of carbon to eliminate sample charging during FIB work. A protective carbon cap is placed according to the plan for the 15 FIB sections. The central 'spine' of the cap runs perpendicular to the front of the sample, and the 'ribs' protruding from either side run parallel. Each rib indicates the location of a planned FIB section, and the spine contains the final two planned sections. We use a cap with a 4 micron-wide spine and 2micron-wide ribs that have ≳3.5 micron of space between them (narrower cuts result in too much re-deposition of material inside the trenches). Using a 30kV, 3nA ion-beam we expose the front surface of the grain and commence milling trenches between sections. Rather than using the typical C-cut to prepare the sample for lift-out, an L-cut is used instead, leaving the sample connected by an interior tab. tab. Sections are lifted out, attached to TEM grids and thinned to electron transparency. TEM analyses show that our hybrid technique preserves both interior and edge features, including surface modifications from exposure to the space environment, such as damaged rims that form in response to solar wind implantation effects and adhering grains. In addition, the FIB sections provide larger areas that are free of fractures and chatter effects in comparison to the microtome thin sections, thus enabling more accurate measurements of solar flare particle track densities that are used to determine the surface exposure age of the particles.
One of the more challenging aspects of the trajectory design for the OSIRIS-REx (Origins, Spectral Interpretation, Resource Identification, and Security-Regolith Explorer) mission at asteroid Bennu was maneuvering while in orbit. The orbital dynamics were highly perturbed by various sources, most notably solar radiation pressure, which degraded accuracy of long term predictions of the spacecraft’s location in orbit. Generally, the Navigation team had to solve three separate issues: correcting a perturbed orbit, changing to a different orbit, or phasing the or bitto place the spacecraft at a specific location at a specific time. The team composed a common framework using up to two maneuvers that could solve all of these problems using an identical schedule that allowed for consistent planning long before the final trajectory could be designed. This orbit trim strategy was successfully used for the first time in the Orbital B phase of the mission to maximize the duration of usable observing geometry in a time-variable orbit with strict operational limits. It was used an additional 3 times throughout the mission to adjust and/or change the orbit, most notably altering the orbit in the weeks prior to the successful Touch-And-Go (TAG)sample collection attempt. This same strategy was used to phase the orbit a total 10 times in preparation for each of the science sorties over potential sample sites, the TAG Rehearsals, and TAG. The trim strategy was demonstrated to be robust and performed exceptionally well in all aspects, which proved critical to a successful sample collection.
Introduction: Meteorite thin and thick sections are routinely shipped from NASA Johnson Space Center to fulfill sample allocation requests from principle investigators around the world. Sections are also re-turned to JSC when researchers are finished studying them since, in most cases, they can be reused for other studies. The sections are very fragile unfortunately, and sometimes return to us needing repairs. The fol-lowing should give you an idea of how we repair sections here in the very lab where they were created. NOTE: Please do not attempt to repair ANSMET meteorite sections that are in your possession. We will perform the repairs for you at NASA JSC if you send the section back to us. Section Delamination: The majority of the meteorite sections that we produce here are secured to the glass slide using a high quality, two-part epoxy. Occasionally, we are asked to use superglue if the researcher wishes to dismount the section from the slide. Both epoxy and superglue are excellent adhesives, but they both tend to embrittle with time which results in delamination from the slide. Exposure to vacuum can also degrade the adhesion between the sample section and the glass slide. Repeated handling of the slide edges can accelerate delamination and, as a preventive measure, the outer 1-2 mm of epoxy is trimmed from newly created sections at JSC. If conductive tapes (copper, carbon, etc.) are used on the section during analysis, great care must be taken in removing the tape so that the epoxy is not pulled up with it. If in doubt, the tape can be left on the section when it is returned to JSC. Before we perform any repairs to sample sections, carbon, gold, or other coatings are removed. We accomplish this using a slurry of 0.05 micron alumina and 190 proof ethyl alcohol applied to a felt polishing pad fitted to a rotating lap wheel. Coatings are re-moved in this manner from all sections that are re-turned to JSC. The extent of the delamination determines how we proceed with the section repair. If the meteorite sample area of the section is not disturbed, then we carefully remove the delaminated epoxy. This is done using a binocular microscope with a 6X zoom, cut-proof gloves, and a very sharp, single edged razor blade. We cut the delaminated epoxy with the blade angled away from the sample area and using very light pressure. The trimmed section is then cleaned in an ultrasonic bath of 200 proof ethyl alcohol for no more than 10 seconds and carefully dried using a lint-free clean room wipe. The section is then placed into a lab oven at 110o F in preparation for epoxy. We mix the resin and hardener components of the low viscosity epoxy and very small amounts are applied to the cut edges of the section using a needle probe and the binocular microscope. Warming the epoxy helps secure the existing section by filling any voids between the glass slide and the section. After the new epoxy cures, we give the section a light polish on a lap wheel fitted with cotton polishing paper that is charged with 1 micron diamond paste. If the section has delaminated to the point of sample area being lifted from the glass, then it may be irreparable. We employ the above technique along with clamping the section in a Teflon pad arrangement in order to flatten the sample while the epoxy cures. Otherwise, the sample will tend to curl. This works to some degree, but once the sample area curls, it seldom re-turns to the original flatness without cracking or bending. Canada Balsam and Crystalbond: We repair damaged sections that had originally been prepared using Canada Balsam or Crystalbond adhesives through the gradual application of heat. We take great care with these samples since these bonding materials tend to get brittle with age. The section is heated in gradual steps (40-50o F per hour) to the melting point of the adhesive. We repair the sample while the adhesive is fluid and then the section is cooled in the same gradual manner in which it was heated. Slide Cracks and Breaks: Accidents happen. Especially with something as small and fragile as a thin/thick section. We all know someone who has driven a microscope objective into a section. As bad as the damage may look, the section can be repaired in most instances. NOTE: Please do not try to tape or glue section pieces back together prior to returning the dam-aged section. This practice usually renders the section irreparable. If the glass slide is cracked but the section is still in one piece, we repair it by infilling the crack with the low viscosity epoxy mentioned earlier. If the slide is in pieces, we can reassemble it with epoxy on a new backer slide. This is a tricky task as the pieces need to be in the correct plane with respect to each other, especially if the sample area is split among several pieces.
Probabilistic aerodynamic databases are a crucial component of the development lifecycle for aerospace vehicles. A key challenge when building aerodynamic databases is that most data used to construct them represent various simplifications of the real flight vehicle. For example, wind tunnel models often simplify the vehicle geometry and surface roughness characteristics, while CFD computations often make simplifications to the physics being modeled, such as fully laminar or turbulent calculations. Multifidelity data fusion models rely on a user being able to define a hierarchy of fidelity levels anchored to some "truth" data. This approach is unsatisfactory when no data can be considered to accurately reflect real flight conditions. In this work, we provide an alternative approach by presenting a consistent mathematical framework for building probabilistic aerodynamic databases in the form of a conditional probability distribution described by an ensemble of multifidelity Gaussian Processes. Instead of relying on a single hierarchy of data fidelity levels, the presented framework identifies a "nominal" configuration and potential corrections to the nominal which represent specific physical phenomena not represented in the nominal data. The nominal and correction functions themselves are constructed as multifidelity Gaussian Processes and linearly combined to form an ensemble model which fuses the uncertainties associated nominal and correction models. Results obtained using the proposed framework on a simplified Orion Crew Module wind tunnel dataset demonstrate the predictive capability of the multihierarchy framework. We further demonstrate the benefits of such a probabilistic aerodynamic database approach through function sampling and computing the conditional distributions of derived quantities, such as the trim angle of attack and aerodynamic coefficients at trim.
The designs of Proportional-Integrated-Filter (PIF) auto-pilots for a General Aviation (NAVION) aircraft are presented. The PIF autopilot uses the sampled-data regulator and command generator tracking to determine roll select, pitch select, heading select, altitude select and localizer/glideslope capture and hold autopilot modes. The PIF control law uses typical General Aviation sensors for state feedback, command error integration for command tracking, digital complementary filtering and analog prefiltering for sensor noise suppression, a control filter for computation delay accommodation and the incremental form to eliminate trim values in implementation. Theoretical developments described in detail, were needed to combine the sampled-data regulator with command generator tracking for use as a digital flight control system. The digital PIF autopilots are evaluated using closed-loop eigenvalues and linear simulations. The implementation of the PIF autopilots in a digital flight computer using a high order language (FORTRAN) is briefly described. The successful flight test results for each PIF autopilot mode is presented.
This paper presents some recently added capabilities to RAGGS, Rockwell Automated Grid Generation System. Included are the trimmed surface handling and display capability and structures and unstructured grid generation on trimmed Bezier and NURBS (non-uniform rational B-spline surfaces) quilted surfaces. Samples are given to demonstrate the new capabilities.
Background: Investigators using metagenomic sequencing to study microbiomes often trim and decontaminate reads without knowing their effect on downstream analyses. Objective: This study was designed to evaluate the impacts JGI trimming and decontamination procedures have on assembly and binning metrics, placement of MAGs into species trees, and functional profiles of MAGs extracted from complex rhizosphere metagenomes, as well as how more aggressive trimming impacts these binning metrics. Methods: Twenty-three Miscanthus x giganteus rhizosphere metagenomes were subjected to different combinations and thresholds of force, kmer, and quality trimming and decontamination using BBDuk. Reads were assembled and binned in KBase. Phylogenomic and statistical analyses were applied to evaluate the effects of trimming and decontamination on downstream analyses. Results: We found that JGI trimmed and decontaminated reads had significant impacts on assembly and binning metrics compared to raw reads, including significantly higher total contig counts, more contigs greater than 10k bp in length, and larger total lengths of raw assemblies compared to QC assemblies, and 2.0% lower average contamination of QC MAGs compared to raw MAGs. We also found that differences in the placement of MAGs in species trees increased with decreasing completeness and contamination thresholds. Furthermore, aggressive trimming (Q20) was found to significantly reduce MAG counts. Conclusion: Trimming and decontamination of metagenomics reads prior to assembly can change an investigator’s answer to the questions, “Who is there and what are they doing?” However, mild trimming and decontamination of metagenomic reads with high-quality scores are recommended for removing sample processing and sequencing artifacts.
This paper presents the designs of Proportional-Integral-Filter (PIF) autopilots for a General Aviation (NAVION) aircraft. The PIF autopilots use modern control theory to determine heading select and altitude select and hold autopilot modes. The PIF control law uses typical General Aviation sensors for state feedback; command error integration for command tracking; digital complimentary filtering and analog prefiltering for sensor noise suppression; a control filter for computation delay accommodation; and the incremental form to eliminate trim values in implementation. Theoretical developments for the control law are described which combine the sampled-data regulator with command generator tracking for use as a digital flight control system. The digital PIF autopilots are evaluated using closed-loop eigenvalues and simulations. Successful flight test results for the PIF autopilots are presented for different turbulence conditions and quadratic weights.
There are specific NASA requirements for source-specific encapsulated microbial density for encapsulated organisms in non-metallic materials. Projects such as the Mars Science Laboratory (MSL) that use large volumes of non-metallic materials of planetary protection concern pose a challenge to their bioburden budget. An optimized and adapted destructive hardware technology employing a commercial blender was developed to assess the embedded bioburden of thermal paint for the MSL project. The main objective of this optimization was to blend the painted foil pieces in the smallest sizes possible without excessive heating. The small size increased the surface area of the paint and enabled the release of the maximum number of encapsulated microbes. During a trial run, a piece of foil was placed into a blender for 10 minutes. The outside of the blender was very hot to the touch. Thus, the grinding was reduced to five 2-minute periods with 2-minute cooling periods between cycles. However, almost 20% of the foil fraction was larger (>2 mm). Thus, the largest fractions were then put into the blender and reground, resulting in a 71% increase in particles less than 1 mm in size, and a 76% decrease in particles greater than 2 mm in size. Because a repeatable process had been developed, a painted sample was processed with over 80% of the particles being <2 mm. It was not perceived that the properties (i.e. weight and rubber-like nature) of the painted/foil pieces would allow for a finer size distribution. With these constraints, each section would be ground for a total of 10 minutes with five cycles of a 2-minute pulse followed by a 2-minute pause. It was observed on several occasions that a larger blade affected the recovery of seeded spores by approximately half an order of magnitude. In the standard approach, each piece of painted foil was aseptically removed from the bag and placed onto a sterile tray where they were sized, cut, and cleaned. Each section was then weighed and placed into a sterile Waring Laboratory Blender. Samples were processed on low speed. The ground-up samples were then transferred to a 500-mL bottle using a sterile 1-in. (.2.5-cm) trim brush. To each of the bottles sterile planetary protection rinse solution was added and a modified NASA Standard Assay (NASA HBK 6022) was performed. Both vegetative and spore plates were analyzed.
We demonstrate that scientists can simplify their satellite data validation workflow with the use of NASA Godddard Earth Sciences Data and Information Services Center (GES DISC) subsetting services. We perform a sample validation of Aura ozone products collocated with ground-based ozone measurements using subsetting services to trim satellite data to only the relevant user-defined variables and spatio-temporal region. Because the subsetting service automatically returns only relevant data granules that adhere to a set of user-defined coincidence criteria, user workload is greatly reduced. Moreover, the resultant data files are substantially smaller than full data granules due to the subsetting service further culling the data to the relevant geospatio-temporal coincidence criteria, user-defined variables, and user-defined dimensions of variables. This decreases data download throughput and file storage requirements. The validation presented here quantifies the time and file size savings that can be achieved by utilizing subsetting services within the satellite data validation workflow.
The MAESTRO system is a mission analysis tool designed to present to the user information necessary to make the various decisions required in the design and execution of a spaceflight mission. The system was designed so that it can be used in both the pre-launch mission planning phase of a mission and during the flight as an in-flight decision making tool. A description of each of the following modes is presented: (1) trajectory propagation mode; (2) retro-fire determination mode; (3) midcourse analysis determination mode; (4) Monte Carlo mode; (5) verification mode; (6) orbit stability mode; and (7) post injection trim mode. A description of the inputs necessary to run the program mode is given along with a sample case.
Computer programs for the design of analog and digital flight control systems are documented. The program DIGADAPT uses linear-quadratic-gaussian synthesis algorithms in the design of command response controllers and state estimators, and it applies covariance propagation analysis to the selection of sampling intervals for digital systems. Program SCHED executes correlation and regression analyses for the development of gain and trim schedules to be used in open-loop explicit-adaptive control laws. A linear-time-varying simulation of aircraft motions is provided by the program TVHIS, which includes guidance and control logic, as well as models for control actuator dynamics. The programs are coded in FORTRAN and are compiled and executed on both IBM and CDC computers.
Sputtering of lunar regolith by protons as well as solar-wind heavy ions is considered. From preliminary measurements of H+, Ar+1, Ar+6 and Ar+9 ion sputtering of JSC-1A AGGL lunar regolith simulant at solar wind velocities, and TRIM simulations of kinetic sputtering yields, the relative contributions of kinetic and potential sputtering contributions are estimated. An 80-fold enhancement of oxygen sputtering by Ar+ over same-velocity H+, and an additional x2 increase for Ar+9 over same-velocity Ar+ was measured. This enhancement persisted to the maximum fluences investigated is approximately 1016/cm (exp2). Modeling studies including the enhanced oxygen ejection by potential sputtering due to the minority heavy ion multicharged ion solar wind component, and the kinetic sputtering contribution of all solar wind constituents, as determined from TRIM sputtering simulations, indicate an overall 35% reduction of near-surface oxygen abundance. XPS analyses of simulant samples exposed to singly and multicharged Ar ions show the characteristic signature of reduced (metallic) Fe, consistent with the preferential ejection of oxygen atoms that can occur in potential sputtering of some metal oxides.
The theoretical derivation of the set of equations is discussed which is applicable to modeling the dynamic characteristics of aeroelastically-scaled models flown on the two-cable mount system in a 16 ft transonic dynamics tunnel. The computer program provided for the analysis is also described. The program calculates model trim conditions as well as 3 DOF longitudinal and lateral/directional dynamic conditions for various flying cable and snubber cable configurations. Sample input and output are included.
The static aeroelastic equilibrium equations for slender, straight wings are modified to incorporate the effects of aerodynamically-coupled formation flight. A system of equations is developed by applying trim constraints and is solved for component lift distribution, trim angle-of-attack, and trim aileron deflection. The trim values are then used to calculate the elastic twist distribution of the wing box. This system of equations is applied to a formation of two gliders in trimmed flight. Structural and aerodynamic properties are assumed for the gliders, and solutions are calculated for flexible and rigid wings in solo and formation flight. It is shown for a sample application of two gliders in formation flight, that formation disturbances produce greater twist in the wingtip immersed in the vortex than for either the opposing wingtip or the wings of a similar airplane in solo flight. Changes in the lift distribution, resulting from wing twist, increase the performance benefits of formation flight. A flexible wing in formation flight will require greater aileron deflection to achieve roll trim than a rigid wing.
A rotorcraft comprehensive analysis was used to generate aeroelastic stability predictions for both Ingenuity and the Mars Sample Recovery Helicopters. The analysis was performed multiple times for each rotor system with sequential increases to the level of modeling complexity. Initial cases used an independent blade analysis, trim inflow distribution, no airframe degrees of freedom, and a hover condition (a time-invariant problem). The final model used all blades, dynamic inflow, airframe degrees of freedom, and a Floquet theory approach to the flutter analysis. The approach of sequentially increasing modeling complexity was employed to ensure the causes of any observed instabilities could be identified. For each case, stability results were determined across a range of air densities, tip Mach numbers, and rotor collective pitch settings. For the Sample Recovery Helicopter, a forward flight condition analysis with the highest level of modeling complexity was also performed. The aeroelastic stability predictions showed both the Ingenuity and Sample Recovery Helicopter rotor systems to be stable for all analyzed conditions. Parameter excursions of structural properties were performed to explore conditions resulting in aeroelastic instabilities.