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At least 217 records · Page 12

Instrumentation and methods for efficient time-resolved X-ray crystallography of biomolecular systems with sub-10 ms time resolution

Time-resolved X-ray crystallography has great promise to illuminate structure–function relations and key steps of enzymatic reactions with atomic resolution. The dominant methods for chemically-initiated reactions require complex instrumentation at the X-ray beamline, significant effort to operate and maintain this instrumentation, and enormous numbers (∼10 5 –10 9 ) of crystals per time point. We describe instrumentation and methods that enable high-throughput time-resolved study of biomolecular systems using standard crystallography sample supports and mail-in X-ray data collection at standard high-throughput cryocrystallography synchrotron beamlines. The instrumentation allows rapid reaction initiation by mixing of crystals and substrate/ligand solution, rapid capture of structural states via thermal quenching with no pre-cooling perturbations, and yields time resolutions in the single-millisecond range, comparable to the best achieved by any non-photo-initiated method in both crystallography and cryo-electron microscopy. Our approach to reaction initiation has the advantages of simplicity, robustness, low cost, adaptability to diverse ligand solutions and small minimum volume requirements, making it well suited to routine laboratory use and to high-throughput screening. We report the detailed characterization of instrument performance, present structures of binding of N -acetylglucosamine to lysozyme at time points from 8 ms to 2 s determined using only one crystal per time point, and discuss additional improvements that will push time resolution toward 1 ms.

Indergaard, John A. (ORCID:000000022367699X)↗

Operating advanced scientific instruments with AI agents that learn on the job

Advanced scientific user facilities, such as next generation X-ray light sources and self-driving laboratories, are revolutionizing scientific discovery by automating routine tasks and enabling rapid experimentation and characterizations. However, these facilities must continuously evolve to support new experimental workflows, adapt to diverse user projects, and meet growing demands for more intricate instruments and experiments. This continuous development introduces significant operational complexity, necessitating a focus on usability, reproducibility, and intuitive human-instrument interaction. In this work, we explore the integration of agentic AI, powered by Large Language Models (LLMs), as a transformative tool to achieve this goal. We present our approach to developing a human-in-the-loop pipeline for operating advanced instruments including an X-ray nanoprobe beamline and an autonomous robotic station dedicated to the design and characterization of materials. Specifically, we evaluate the potential of various LLMs as trainable scientific assistants for orchestrating complex, multi-task workflows, which also include multimodal data, optimizing their performance through optional human input and iterative learning. We demonstrate the ability of AI agents to bridge the gap between advanced automation and user-friendly operation, paving the way for more adaptable and intelligent scientific facilities.

Large Language Models↗

Passive Temperature Sensors for Nuclear Applications

In April 2007, the Department of Energy (DOE) designated the Advanced Test Reactor (ATR) a National Scientific User Facility (NSUF) to advance US leadership in nuclear science and technology. By attracting new users from universities, laboratories, and industry, this program supports basic and applied nuclear research to help address the nation's energy security needs. In support of this program, the Idaho National Laboratory (INL) established in-house capabilities to develop, fabricate, test, and qualify new and enhanced temperature sensors for irradiation testing. This effort is continuing today through the DOE?s Advanced Sensors and Instrumentation (ASI) program. Although most efforts emphasize sensors capable of providing real-time data, selected tasks have been completed to enhance passive sensors for irradiations where instrumentation leads cannot be included. These sensors include silicon carbide (SiC) monitors, melt wires and the sublime temperature monitor. SiC monitors are available to detect peak irradiation temperatures between 200°C and 800°C in reactor locations where instrumentation leads cannot be used. SiC monitors may be evaluated using specialized equipment installed at INL?s Measurement Sciences Laboratory (MSL). A melt wire inventory is also maintained at MSL. This inventory contains wires for specific use in irradiation experiments ranging in temperatures from 30°C to 1500°C. Melt wires and SiC monitors have had decades of research and application. Recent research has produced a passive monitor known as the sublime temperature monitor. This passive sensor has the capability of recording temperature gradients. This paper will discuss passive temperature sensors currently being researched and implemented under the ASI program.

11 - NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Calculation of rf-induced temporal jitter in ultrafast electron diffraction

A significant contribution to the temporal resolution of an ultrafast electron diffraction (UED) instrument is arrival time jitter caused by amplitude and phase variation of radio-frequency (rf) cavities. In this paper, we present a semianalytical approach for calculating rf-induced temporal jitter from klystron and rf cavity parameters. Our approach allows fast estimation of temporal jitter for MeV-UED beamlines and can serve as a virtual timing tool when shot-to-shot measurements of rf amplitude and phase jitters are available. A simulation study for the SLAC MeV-UED instrument is presented, and the temporal resolution of several beamline configurations is compared.

47 OTHER INSTRUMENTATION↗

Dispersive X-ray absorption spectroscopy using independent grazing-incidence focusing and convexly bent Bragg-crystal dispersing optics

We present a modular instrument for dispersive X-ray absorption spectroscopy (DXAS) developed for the Advanced Spectroscopy Beamline at Sector 25 of the Advanced Photon Source. The setup employs a double-multilayer monochromator to provide X-rays with a broad energy bandwidth, Kirkpatrick–Baez mirrors for focusing, a convexly bent Bragg-crystal polychromator for energy dispersion, and a pixel-array detector to resolve all X-ray energies and collect their intensity simultaneously, thereby enabling acquisition of a full X-ray absorption spectrum in a single shot. The use of separate optics for X-ray focusing and energy dispersion provides high spatial resolution and avoids chromatic aberrations inherent in focusing bent-crystal optics, and a modular design makes implementation of the technique at other beamlines possible without requiring modifications to the upstream beamline configurations. Theoretical calculations are performed to determine optimal instrument operating parameters and demonstrate that an energy resolution better than the K-edge core-hole lifetime broadening can be maintained while providing a sufficient bandwidth for X-ray absorption near-edge structure spectroscopy through the full operating range of 5–11 keV. Additionally, instrument design, data analysis methods, and initial DXAS results on lithium–manganese–nickel oxide laminates are presented.

47 OTHER INSTRUMENTATION↗

Integrating ORNL’s HPC and Neutron Facilities with a Performance-Portable CPU/GPU Ecosystem

We explore the development of a performance-portable CPU/GPU ecosystem to integrate two of the US Department of Energy’s (DOE’s) largest scientific instruments, the Oak Ridge Leadership Computing facility and the Spallation Neutron Source (SNS), both of which are housed at Oak Ridge National Laboratory. We select a relevant data reduction workflow use-case to obtain the differential scattering cross-section from data collected by SNS’s CORELLI and TOPAZ instruments. We compare the current CPU-only production implementation using the Garnet Python multiprocess package based on the Mantid C++ framework against our proposed CPU/GPU implementation that uses the LLVM-based, just-in-time Julia scientific language and the JACC.jl performance-portable package. Two proxy apps were developed: (i) an app for extracting relevant Mantid kernels (MDNorm) in C++ and (ii) the Julia MiniVATES.jl miniapp. We present performance results for NVIDIA A100 and AMD MI100 GPUs and AMD EPYC 7513 and 7662 CPUs. The results provide insights for future generations of data reduction software that can embrace performance portability for an integrated research infrastructure across DOE’s experimental and computational facilities.

Hahn, Steven↗

How are Heterogeneous Nucleation Rate Observations Influenced by Instrument Resolution?

Experimental measurements of the heterogeneous nucleation rate rely on counting the number of nuclei with time. However, the size of a thermodynamically stable nucleus is often a few nanometers in diameter and is below the resolution of most (in situ) measurement techniques that provide a statistically valid sample. Due to the finite resolution of the instruments and analysis methods, it is challenging to capture the incipient nuclei and the subsequent evolution of nuclei density over time. In this work, we demonstrate the impact of instrument resolution on observed nuclei densities by comparing numerical modeling with experimental results. Further, to achieve this, we implemented heterogeneous nucleation within the pore-scale reactive transport modeling framework using classical nucleation theory (CNT). We compared the modeling results with nucleation rates measured using X-ray nanotomography (XnT) and evaluated how these impact the apparent values of the prefactor and interfacial energy based on CNT and the crystal growth rate. Specifically, we applied a resolution threshold (artificial resolution limit) in the model during nuclei counting to resemble an experimental resolution, ranging from 15 to 500 nm. The findings reveal that the instrument resolution significantly impacts the apparent prefactor and interfacial energy. Both apparent prefactor and interfacial energy decrease with a decrease in the instrument resolution. While deviation in the prefactor due to resolution is anticipated, those in the interfacial energy are unexpected. The approach described here allows one to correct apparent nucleation rates that depend on the instrument’s resolution to derive “intrinsic” CNT parameters for the prefactor and interfacial energy.

47 OTHER INSTRUMENTATION↗

ArcticShark Uncrewed Aerial System

Some studies of atmospheric processes benefit from specialized instrumented observation platforms, including towers, crewed aircraft, tethered balloon systems, and uncrewed aerial systems (UAS). The ArcticShark UAS, managed by the U.S. Department of Energy’s (DOE’s) Atmospheric Radiation Measurement (ARM) User Facility, has emerged as a vital scientific platform, providing comprehensive measurements to expand the horizons of atmospheric research and ARM data. The ArcticShark focuses on small-scale, accurate, and repetitive flight patterns over areas of scientific interest, including ARM’s ground observatories in Alabama and Oklahoma. When used in concert with data from ground-based instruments and other aerial platforms, UAS observations help deliver a complete picture of atmospheric processes, helping scientists evaluate and improve the accuracy of earth system models needed to inform energy infrastructure planning.

47 OTHER INSTRUMENTATION↗

FY25 Mid-Year Report: FABIA In-Field Laser Absorption Spectroscopy for UF6 Enrichment

From September 2024 through April 2025, the FABIA team has been working towards completing the IAEA requirements for technology transfer of the instrument. The primary tasks in place for this transfer are to complete a validation study using various enrichments of UF6, to finalize the data analysis routines in the FABIA software, and to complete FABIA electrical component compatibility. These topics are expanded in greater detail below. In addition to the tasks, the FABIA team hosted IAEA representatives to observe a live analysis demonstration of the FABIA instrument on February 3, 2025. As a result of this visit, some updates to the tasks were communicated.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Design, Manufacturing, and Validation of an Optimized Electric Machine Enabled by 3D Printing

The collaboration between the National Laboratory of the Rockies (NLR) and LaunchPoint Electric Propulsion Solutions, Inc. (LaunchPoint) focuses on manufacturing and additive design of electric machines enabled by DOE’s program for three-dimensional printing (MADE3D) as applied to advanced drivetrains and their impact on turbine capital cost and lifetime energy production. Initial efforts will focus on the rotor structure and rotor core of the drivetrain including the active materials (electrical steel and magnets) and could later expand to the stator. The verification activities will be conducted with an instrumented electric machine and a small dynamometer.

17 WIND ENERGY↗

Desert-Urban System Integrated Atmospheric Monsoon (DUSTIEAIM) in the Southwestern United States Science Plan

The Desert-Urban System Integrated Atmospheric Monsoon (DUSTIEAIM) campaign is a groundbreaking, high-impact scientific mission that will transform how we understand and respond to energy and water challenges in one of America’s fastest-growing and most heat-stressed urban regions: Phoenix, Arizona. Starting in April 2026, this 18-month field campaign harnesses the full power of the U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) user facility and an interdisciplinary science team including national laboratories, universities, and agencies with a broad range of subject-matter expertise. With cutting-edge instruments, active and passive ground-based sensors, radars, and integrated modeling, DUSTIEAIM will deliver the most comprehensive environmental data set ever collected for a desert-urban-agricultural interface.

54 ENVIRONMENTAL SCIENCES↗

Impact Testing Theories and Techniques Employed at the TA-III Mechanical Shock Complex

We present theories and techniques to support safe, predictable, and efficient impact testing at the Sandia National Laboratories TA-III Mechanical Shock Complex (MSC), located in Building 6570. The two testing instruments used at the MSC are the 20-inch actuator, which is a launcher that propels sleds down an indoor track, and an indoor 6-in bore compressed-gas powered cannon. The theories and techniques presented derive from basic mechanical engineering principles but are significantly informed and validated by testing experience at the MSC.

42 ENGINEERING↗

Ensemble methods for quantification of potassium oxide in ChemCam Mars and laboratory spectra

In this paper we test new approaches for predicting the amount of element oxides in rock samples from the ChemCam instrument suite onboard the NASA Curiosity rover by focusing on K 2 O. Using the expanded dataset compiled by Gasda et al. (2021) with and without the Earth to Mars (E2M and NoE2M) transformation discussed in Clegg et al. (2017) we trained blended submodels using the “double blending” technique and compared these to ensemble methods (Random Forest, ExtraTrees, and Gradient Boosting Regression). We found that ensemble methods performed similar to blended submodels when looking at RMSE-P on the laboratory spectra and provided significant advantages when looking at spectra coming from Mars. For the full model, blended submodels achieved an RMSE-P of 0.62 and 0.60 (E2M and NoE2M respectively) while Gradient Boosting Regression resulted in a slightly improved RMSE-P of 0.59 and 0.60. More importantly, by employing a local RMSE-P estimation technique where model performance is evaluated based on nearby test samples we found that using ensemble methods can lower the quantification limit for K 2 O from the current value of ≈0.6 wt% to ≈0.08 wt% using Extra Trees and Random Forest. This would allow for a much larger range of K 2 O values to be quantified on Mars with greater certainty given that most targets seen on Mars tend to have <1 wt% K2O. Finally, we used both Mean Decrease in Impurity (MDI) and permutation importance techniques to investigate the wavelengths used by the ensemble methods and found that they correspond to known potassium emission lines. This suggests that ensemble methods can provide an easier to train and improved alternative to blended submodels for predicting potassium compositions from Laser Induced Breakdown Spectroscopy (LIBS) data.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

FY25 Mid-Year Report: FNCL Enhancements Implementation

During the first half of FY25 the FNCL team has made consistent progress toward the completion of our project goals. The FNCL prototype panel design has been successfully applied to a fully instrumented 3-panel system which is actively under construction. The FNCL Demonstrator System contains solid scintillators instrumented with SiPMs, which operate on an updated CAEN digitizer, requires no high-voltage, and has a smaller overall footprint. The onboard software will include the LLNL-developed GMM-PSD signal processing. Later this year the system will be experimentally tested alongside the baseline FNCL instrument at LLNLs ISSA facility. In addition to a full systems test, the performance of a DD generator for active interrogation measurements compared to the standard AmLi source will be established for both systems. The data collected at the ISSA facility will be used to experimentally validate the FNCL-Fast Isotopic Fuel Assay’s (FIFA) capability to measure U-235 loading and to predict gadolinium poison content with passive interrogation. The FNCL-FIFA modal was benchmarked with simulation-based data and a user-friendly GUI was added earlier this year. Three separate codes have been submitted to the LLNL ESW system for review prior to their transfers. These include the Predictive Modeling Response toolkit, GMM-PSD firmware beta version, and the FNCL-FIFA analysis package with GUI and user documentation.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Spatial Proteomics towards cellular Resolution

Introduction: Spatial biology is an emerging interdisciplinary field facilitating biological discoveries through the use of spatial omics technologies. Recent advancements in spatial transcriptomics, spatial genomics (e.g. genetic mutations and epigenetic marks), multiplexed immunofluorescence, and spatial metabolomics/lipidomics have enabled high-resolution spatial profiling of gene expression, genetic variation, protein expression, and metabolites/lipids profiles in tissue. These developments contribute to a deeper understanding of the spatial organization within tissue microenvironments at the molecular level. Areas covered: This report provides an overview of the untargeted, bottom-up mass spectrometry (MS)-based spatial proteomics workflow. It highlights recent progress in tissue dissection, sample processing, bioinformatics, and liquid chromatography (LC)-MS technologies that are advancing spatial proteomics toward cellular resolution. Expert opinion: The field of untargeted MS-based spatial proteomics is rapidly evolving and holds great promise. To fully realize the potential of spatial proteomics, it is critical to advance data analysis and develop automated and intelligent tissue dissection at the cellular or subcellular level, along with high-throughput LC-MS analyses of thousands of samples. In conclusion, achieving these goals will necessitate significant advancements in tissue dissection technologies, LC-MS instrumentation, and computational tools.

59 BASIC BIOLOGICAL SCIENCES↗

Analyze the real-time performance of the optimized fiber-PTR instrument

An instrument to perform in-reactor, real-time thermal property measurements of nuclear fuels and materials was recently designed, optimized, and tested at Massachusetts Institute of Technology Research Reactor. It was the second insertion experiments of a total of two rounds. Here we report the collection and analysis of the real-time captured thermal diffusivity data on the preloaded SiC. With the optimized design, the instrument temperature had been successfully raised as we expected. Only one probe (the top one) returned real-time thermal diffusivity in a time span of approximately two days. Measured thermal diffusivity of the preloaded SiC was significantly lower than the literature value at the same temperature, indicating a significant influence from the irradiation induced microstructure damage. Meanwhile, the real-time thermal diffusivity value continuously reduced with time, indicating the dynamic microstructure evolution. The possible reasons of the probes that did not return data were hypothesized. The further optimization of the instrument with the objective to improve the measurement accuracy and instrument survivability is also discussed.

36 MATERIALS SCIENCE↗