A Spatio-temporal Model to estimate West Nile virus cases in Ontario, CA
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Mathematics↗
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Prithvi-EO-2.0: A Versatile Multi-Temporal Foundation Model for Earth Observation Applications
This technical report presents Prithvi-EO-2.0, a new geospatial foundation model that offers significant improvements over its predecessor, Prithvi-EO-1.0. Trained on 4.2M global time series samples from NASA’s Harmonized Landsat and Sentinel-2 data archive at 30m resolution, the new 300M and 600M parameter models incorporate temporal and location embeddings for enhanced performance across various geospatial tasks. Through extensive benchmarking with GEOBench, the 600M version outperforms the previous Prithvi-EO model by 8% across a range of tasks. It also outperforms six other geospatial foundation models when benchmarked on remote sensing tasks from different domains and resolutions (i.e. from 0.1m to 15m). The results demonstrate the versatility of the model in both classical earth observation and high-resolution applications. Early involvement of end-users and subject matter experts (SMEs) are among the key factors that contributed to the project’s success. In particular, SME involvement allowed for constant feedback on model and dataset design, as well as successful customization for diverse SME-led applications in disaster response, land use and crop mapping, and ecosystem dynamics monitoring. Prithvi-EO-2.0 is available on Hugging Face and IBM terratorch, with additional resources on GitHub. The project exemplifies the Trusted Open Science approach embraced by all involved organizations.
Daniela Szwarcman↗
Calibration of a Spatial-Temporal Discrimination Model from Forward, Simultaneous, and Backward Masking
We have been developing a simplified spatial-temporal discrimination model similar to our simplified spatial model in that masking is assumed to be a function of the local visible contrast energy. The overall spatial-temporal sensitivity of the model is calibrated to predict the detectability of targets on a uniform background. To calibrate the spatial-temporal integration functions that define local visible contrast energy, spatial-temporal masking data are required. Observer thresholds were measured (2IFC) for the detection of a 12 msec target stimulus in the presence of a 700 msec mask. Targets were 1, 3 or 9 c/deg sine wave gratings. Masks were either one of these gratings or two of them combined. The target was presented in 17 temporal positions with respect to the mask, including positions before, during and after the mask. Peak masking was found near mask onset and offset for 1 and 3 c/deg targets, while masking effects were more nearly uniform during the mask for the 9 c/deg target. As in the purely spatial case, the simplified model can not predict all the details of masking as a function of masking component spatial frequencies, but overall the prediction errors are small.
Ahumada, Albert J.↗
Modeling spatio-temporal processes in climate models via functional tensor networks
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Safta, Cosmin↗
Five years' central Pacific sea level from in situ array, satellite altimeter and numerical model
Temporal and spatial fetures of central equatorial Pacific Ocean sea-level variation appear similar, in measurements from two very different systems (one in the ocean and one carried on a satellite), and in results from a numerical model of the region. In particular, there is an interannual cycle: during El Nino, Kelvin waves appear at the equator, and the sea-surface ridge associated with the equatorial current system shifts southward; in non-El Nino years, instability waves appear at 6 deg N (strongest around the end of each calendar year), and the ridge shifts to the north. This three-way comparison gives support to both measurement systems and to the numerical model.
Donohue, Kathleen A.↗
Two classes of models for temporal variability of the Io torus
Two classes of spatially uniform models for the Io torus are analyzed for the stability and temporal variability of the torus. It is shown that stable-equilibrium torus models exist in two classes of models, one with nonlinear radial transport loss of plasma (e.g., from centrifugally driven interchanges) and one with linear transport (e.g., from externally driven interchanges). The two classes of models make substantially different predictions regarding temporal variability of the Io torus. Observational tests are proposed that make it possible to discriminate between the two classes.
Cheng, Andrew F.↗
A practical method for modeling temporally-averaged ocean wave frequency-directional spectra for characterizing wave energy climates
Wave energy resource characterization investigations have been hindered because frequency-directional wave spectra are not broadly available for many coastal regions due to the insufficient spatial coverage of buoy observation networks and spectral wave model hindcast outputs. We address this problem by developing and validating a practical method for approximating temporally-averaged frequency-directional wave spectra averaged over periods of months or years from bulk wave parameters, which are available at a much greater coverage and resolution than frequency-directional wave spectra. While the temporally averaged frequency-directional wave spectrum over these periods cannot be used for analyzing a single sea state, it aggregates multiple sea states, identifies dominant wave energy systems representing wave climate, and resolves their spectral characteristics. Therefore, modelling temporally averaged frequency-directional wave spectra is of great value for planning and designing wave energy projects, e.g., resource characterization, site assessment, and conceptual design of wave energy converters. Temporally-averaged frequency-directional wave spectra and related important wave energy parameters approximated using this method are found to be more accurate than commonly used parametric wave spectrum models. This method can be applied to a wide range of wave climates given its universality and high accuracy. Also, the availability of bulk wave parameters from multi-decade high-resolution wave model hindcasts is increasing.
16 TIDAL AND WAVE POWER↗
Estimating coccidioidomycosis endemicity while accounting for imperfect detection using spatio - temporal occupancy modeling
Coccidioidomycosis, or Valley fever, is an infectious disease caused by inhaling Coccidioides fungal spores. Incidence has risen in recent years, and it is believed the endemic region for Coccidioides is expanding in response to climate change. While Valley fever case data can help us understand trends in disease risk, using case data as a proxy for Coccidioides endemicity is not ideal because case data suffers from imperfect detection, including false positives (e.g., travel-related cases reported outside of endemic area) and false negatives (e.g., misdiagnosis or underreporting). Here we proposed a Bayesian, spatio-temporal occupancy model to relate monthly, county-level presence/absence data on Valley fever cases to latent endemicity of Coccidioides, accounting for imperfect detection. We used our model to estimate endemicity in the western United States. We estimated high probability of endemicity in southern California, Arizona, and New Mexico, but also in regions without mandated reporting, including western Texas, eastern Colorado, and southeastern Washington. We also quantified spatio-temporal variability in detectability of Valley fever, given an area is endemic to Coccidioides. We estimated an inverse relationship between lagged 3- and 9-month precipitation and case detection, and a positive association with agriculture. This work can help inform public health surveillance needs and identify areas that would benefit from mandatory case reporting.
60 APPLIED LIFE SCIENCES↗
A phase transition model and temporal logic specifications for smart energy systems - revisited
In this paper, we revisit the method of a phase transition model for representing hybrid systems and temporal logic specifications (TLSs) for specifying desired behaviors of systems, and discuss their usefulness for smart energy systems. On the one hand, the phase transition model incorporates the continuous model of the relay device action with a particular structural form that allows for the construction of a single, global differential-algebraic equation for hybrid systems (thus smoothed hybrid systems). On the other hand, the TLS allows sophisticated descriptions of control specifications addressing both magnitude and time simultaneously, which has recently been applied to the control strategy of several types of continuous and hybrid systems. We provide high-level descriptions of each of the two techniques and present simulation results in the context of smart energy systems.
Park, Byungkwon↗
Multi-Temporal Predictive Modelling of Sorghum Biomass Using UAV-Based Hyperspectral and LiDAR Data
High-throughput phenotyping using high spatial, spectral, and temporal resolution remote sensing (RS) data has become a critical part of the plant breeding chain focused on reducing the time and cost of the selection process for the “best” genotypes with respect to the trait(s) of interest. In this paper, the potential of accurate and reliable sorghum biomass prediction using visible and near infrared (VNIR) and short-wave infrared (SWIR) hyperspectral data as well as light detection and ranging (LiDAR) data acquired by sensors mounted on UAV platforms is investigated. Predictive models are developed using classical regression-based machine learning methods for nine experiments conducted during the 2017 and 2018 growing seasons at the Agronomy Center for Research and Education (ACRE) at Purdue University, Indiana, USA. The impact of the regression method, data source, timing of RS and field-based biomass reference data acquisition, and the number of samples on the prediction results are investigated. R2 values for end-of-season biomass ranged from 0.64 to 0.89 for different experiments when features from all the data sources were included. Geometry-based features derived from the LiDAR point cloud to characterize plant structure and chemistry-based features extracted from hyperspectral data provided the most accurate predictions. Evaluation of the impact of the time of data acquisition during the growing season on the prediction results indicated that although the most accurate and reliable predictions of final biomass were achieved using remotely sensed data from mid-season to end-of-season, predictions in mid-season provided adequate results to differentiate between promising varieties for selection. The analysis of variance (ANOVA) of the accuracies of the predictive models showed that both the data source and regression method are important factors for a reliable prediction; however, the data source was more important with 69% significance, versus 28% significance for the regression method.
09 BIOMASS FUELS↗
The 4-D approach to visual control of autonomous systems
Development of a 4-D approach to dynamic machine vision is described. Core elements of this method are spatio-temporal models oriented towards objects and laws of perspective projection in a foward mode. Integration of multi-sensory measurement data was achieved through spatio-temporal models as invariants for object recognition. Situation assessment and long term predictions were allowed through maintenance of a symbolic 4-D image of processes involving objects. Behavioral capabilities were easily realized by state feedback and feed-foward control.
Dickmanns, Ernst D.↗
A model of temporal variations in ozone density in the Martian atmosphere
Temporal variations of the ozone density profile in the Martian atmosphere at high latitudes are calculated for the course of a Martian year, taking into account seasonal and diurnal variations in temperature, water vapor and solar radiation. Calculations are based on a model including 35 neutral photochemical reactions, and vertical eddy diffusion using a time step of 12 min for the region from the surface to 240 km altitude. Results are found to be in better agreement with Mariner 9 observations of the time and magnitude of the seasonal maximum than previous model calculations. The diurnal variation is predicted to be small near the solstices, with the nighttime ozone density greater than the daytime and the magnitude of the difference dependent on season. Opposite temporal variations are predicted for ozone densities above and below about 25 km, and an ozone density maximum at 35-40 km is obtained. It is suggested that the effects of an aerosol layer may not be important in enhancing predicted ozone concentration, and may even decrease it.
Shimazaki, T.↗
Gaussian Mixture Models for Temporal Depth Fusion
Sensing the 3D environment of a moving robot is essential for collision avoidance. Most 3D sensors produce dense depth maps, which are subject to imperfections due to various environmental factors. Temporal fusion of depth maps is crucial to overcome those. Temporal fusion is traditionally done in 3D space with voxel data structures, but it can be approached by temporal fusion in image space, with potential benefits in reduced memory and computational cost for applications like reactive collision avoidance for micro air vehicles. In this paper, we present an efficient Gaussian Mixture Models based depth map fusion approach, introducing an online update scheme for dense representations. The environment is modeled from an ego-centric point of view, where each pixel is represented by a mixture of Gaussian inverse-depth models. Consecutive frames are related to each other by transformations obtained from visual odometry. This approach achieves better accuracy than alternative image space depth map fusion techniques at lower computational cost.
Matthies, Larry↗
Implications of increased spatial and trophic overlap between juvenile Pacific salmon and Sablefish in the northern California Current
Abstract Objective The study was designed to assess long-term variability in the distribution of juvenile Pacific salmon Oncorhynchus spp. and Sablefish Anoplopoma fimbria. The study also evaluated whether Sablefish and Pacific salmon shared food resources and looked to characterize Sablefish during an understudied period of their life cycle. Methods To meet the objectives, the study used data from 26 years of surface trawls conducted in Oregon and Washington coastal waters (1998–2023). Spatial–temporal models were used to measure changes in abundance and distribution of Pacific salmon and Sablefish along with covariates of ocean temperature. The study evaluated trophic characteristics of Pacific salmon and Sablefish from 2020 for differences. The temporal variation in size and diets of Sablefish were also analyzed, along with energy density of fish caught in 2020. Result The spatial–temporal model demonstrated that there has been a nearshore expansion of juvenile Sablefish over the past 26 years that was correlated with increased ocean temperature. The nearshore expansion of Sablefish resulted in increased spatial and trophic overlap with juvenile Pacific salmon. While feeding in nearshore waters, juvenile Sablefish demonstrated competitive feeding advantages over juvenile Pacific salmon during a critical phase of salmonid early marine life history. Juvenile Sablefish exhibited significant ontogenetic diet and energetic shifts, and even the smallest (68–80 mm fork length) were piscivorous. Conclusions If juvenile Sablefish numbers continue to increase relative to Pacific salmon, they could exert more competitive pressure, especially if food resources become limited. Pacific salmon may experience adverse effects from competition, regardless of whether or not juvenile Sablefish, which have recently expanded into nearshore waters, successfully recruit to the adult population.
Daly, Elizabeth A. (ORCID:0000000195334457)↗
STFM: Accurate Spatio-Temporal Fusion Model for Weather Forecasting
Meteorological prediction is crucial for various sectors, including agriculture, navigation, daily life, disaster prevention, and scientific research. However, traditional numerical weather prediction (NWP) models are constrained by their high computational resource requirements, while the accuracy of deep learning models remains suboptimal. In response to these challenges, we propose a novel deep learning-based model, the Spatiotemporal Fusion Model (STFM), designed to enhance the accuracy of meteorological predictions. Our model leverages Fifth-Generation ECMWF Reanalysis (ERA5) data and introduces two key components: a spatiotemporal encoder module and a spatiotemporal fusion module. The spatiotemporal encoder integrates the strengths of convolutional neural networks (CNNs) and recurrent neural networks (RNNs), effectively capturing both spatial and temporal dependencies. Meanwhile, the spatiotemporal fusion module employs a dual attention mechanism, decomposing spatial attention into global static attention and channel dynamic attention. This approach ensures comprehensive extraction of spatial features from meteorological data. The combination of these modules significantly improves prediction performance. Experimental results demonstrate that STFM excels in extracting spatiotemporal features from reanalysis data, yielding predictions that closely align with observed values. In comparative studies, STFM outperformed other models, achieving a 7% improvement in ground and high-altitude temperature predictions, a 5% enhancement in the prediction of the u/v components of 10 m wind speed, and an increase in the accuracy of potential height and relative humidity predictions by 3% and 1%, respectively. This enhanced performance highlights STFM’s potential to advance the accuracy and reliability of meteorological forecasting.
54 ENVIRONMENTAL SCIENCES↗
Attend and Decode: 4D fMRI Task State Decoding Using Attention Models
Source code for Brain Attend and Decode paper. Functional magnetic resonance imaging (fMRI) is a neuroimaging modality that captures the blood oxygen level in a subject's brain while the subject either rests or performs a variety of functional tasks under different conditions. Given fMRI data, the problem of inferring the task, known as task state decoding, is challenging due to the high dimensionality (hundreds of million sampling points per datum) and complex spatio-temporal blood flow patterns inherent in the data. In this work, we propose to tackle the fMRI task state decoding problem by casting it as a 4D spatiotemporal classification problem. We present a novel architecture called Brain Attend and Decode (BAnD), that uses residual convolutional neural networks for spatial feature extraction and self-attention mechanisms for temporal modeling. We achieve significant performance gain compared to previous works on a 7-task benchmark from the large-scale Human Connectome Project-Young Adult (HCP-YA) dataset. We also investigate the transferability of BAnD's extracted features on unseen HCP tasks, either by freezing the spatial feature extraction layers and retraining the temporal model, or finetuning the entire model. The pre-trained features from BAnD are useful on similar tasks while finetuning them yields competitive results on unseen tasks/conditions.
Ng, BrendaM.↗
Modeling the temporal and spatial variations of the vertical structure of Jupiter's atmosphere using observations of the 3-0 hydrogen quadrupole lines
An observational program was established in 1983 to monitor the spatial and temporal variations in the Jovian atmosphere over short and long time scales. The program involves tracking several different longitudes as they rotate around the planet from one limb to another. This tracking experiment was done at many different wavelengths including the 3-0 S(1) and S(0) hydrogen quadrupole lines as well as several broad band methane absorptions. The June 1983 hydrogen quadrupole data was reduced and equivalent widths were measured for approximately 25 east-west positions across the planet at 7 different latitudes for both wavelengths. The data for the South Tropical Zone (20 deg. S) was modeled extensively and the effects of the various model parameters on the value of the calculated equivalent widths of both lines was measured as a longitude rotated from the east (or morning) limb to the west (or evening) limb. The value of the equivalent width is also quite sensitive to the height of the NH3 cloud top and to the value used for the single scattering albedo. A combination of these parameters changing on a diurnal time scale could also explain these observations. This gradual increase from one limb to the other appears in the data for both the North and South Equatorial Belts as well as the equatorial region and the North Tropical Zone. Models that used only normal hydrogen and models that used only equilibrium hydrogen were studied.
Cunningham, C. C.↗
Micro-kinetic modeling of temporal analysis of products data using kinetics-informed neural networks
Kinetics-informed neural networks improve fit quality for multi-pulse and noisy temporal analysis of products datasets.
Nai, Dingqi↗