Search NASA⌕ Search

SEARCH · Search NASA

Results for “stationary phase”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 55 records · Page 3

The Cell Utilized Partitioning Model as a Predictive Tool for Optimizing Counter-Current Chromatography Processes

Counter-current chromatography (CCC) is capable of unique elution modes that isolate analytes using the movement of the stationary phase in addition to moving the mobile phase. These modes include elution-extrusion CCC (EECCC) and dual-mode CCC (DM CCC) that are not possible in traditional solid-liquid chromatography systems. Although EECCC and DM CCC are widely used to recover highly retained components, to our knowledge, optimizing the elution process in these modes with predictive models has not been reported. To address this gap, we developed a predictive model for CCC dubbed the Cell Utilized Partitioning (CUP) model. The CUP model accurately predicts the effluents of multicomponent separations in EECCC and DM CCC modes when compared to experimental data. Furthermore, CUP model simulations were extended to investigate the influence of operating and intrinsic parameters on the yield and productivity, and to compare the separation performances of EECCC and DM CCC in various conditions. The results demonstrate that low distribution constants, usually a KD less than 1, and a selectivity > 1.3, under specific flowrate ranges, increase both productivity and yield. From these results, generalized optimization and scaleup guidelines are proposed that can apply to research settings and to industrial processes to maximize preparative CCC performance.

BIOMASS FUELS,INORGANIC, ORGANIC, PHYSICAL, AND AN↗

Pedestal formation via different trajectories in the stability space in response to the timing scan of neutral beam heating in DIII-D

The frequency of type-I ELMs decreases as the initiation of the neutral beam injection (NBI) heating is delayed with respect to the time when plasma current (I p ) reaches flat-top in the ITER Baseline Scenario discharges in DIII-D. Henceforth, the time gap between the NBI initiation and I p flat-top will be referred to as “heating delay.” As the heating delay is modified, pedestal formation follows different trajectories in the edge current density–pedestal pressure gradient (j edge -∇p e ped ) space from the L-H transition toward the first ELM event. During the stationary phase after the first ELM, the ELM frequency (f ELM ) decreases by a factor of ~2 as the heating delay is increased. A longer pedestal recovery time in the inter-ELM period is observed for the low f ELM discharges as compared to the high f ELM discharges. Both low and high f ELM discharges show nearly identical profiles of electron density and temperature and have a similar MHD stability just before an ELM crash. However, a marked difference is observed in the magnetic spectrogram of the high and low f ELM discharges in response to the variation in the heating delay. The main difference is in the 200–400 kHz range of the magnetic spectra. A quasi-coherent mode (QCM) at 220 kHz and weaker broadband fluctuations are observed in the high f ELM discharges, while only strong broadband fluctuations are prevalent in the low f ELM discharges. ELM-synchronized analysis shows that the time evolution of these modes is different for the high and low f ELM discharges. The localization of both these modes is confirmed at the maximum gradient region of the pedestal. We hypothesize that these modes cause important pedestal transport and that the difference in the pedestal recovery of the high and low f ELM discharges is a result of the difference in transport driven by these modes, as they change with changes in the heating delay. It is demonstrated experimentally for the first time that discharges with similar pedestal parameters can carry the history of the heating delay into the stationary phase and that changes in turbulent-driven transport are a likely cause of changes in f ELM observed with variations of heating delay.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

What is Chromatography? [Slides]

A laboratory technique for separating a mixture into its components. This is done with a mobile phase moving across a stationary phase containing the mixture. The components of the mixture will move with the mobile phase at differing speeds depending on their properties.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Response of a mouse hybridoma cell line to heat shock, agitation, and sparging

A mouse hybridoma cell line is used as a model system for studying the effect of environmental stress on attachment-independent mammalian cells. The full time course of recovery for a mouse hybridoma cell line from both a mild and intermediate heat shock is examined. The pattern of intracellular synthesis is compared for actively growing, log phase cells and nondividing, stationary phase cells.

Passini, Cheryl A.↗

Organics in water contamination analyzer, phase 1

The requirements which would result in identifying the components of an automatic analytical system for the analysis of specific organic compounds in the space station potable water supply are defined. The gas chromatographic system for such an analysis is limited to commercially available off-the-shelf hardware and includes the sample inlet, an ionization detector, capillary columns as well as computerized compound identification. The sampling system will be a special variation of the purge and trap Tenax mode using six-port valves and a 500 microliter water sample. Capillary columns used for the separating of contaminants will be bonded phase fused silica with a silicone stationary phase. Two detectors can be used: photoionization and far ultraviolet, since they are sensitive and compatible with capillary columns. A computer system evaluation and program with the principle of compound identification based on the retention index is presented.

Source record↗

Light-dependent hydrogen production by C. reinhardi

The activity of hydrogenase in nonsynchronous, photoheterotrophically grown cells of C. reinhardi is a function of culture age. Rapidly growing cultures (exponential phase) exhibit lower hydrogenase activity than early stationary phase cultures. During prolonged dark anaerobic incubation the hydrogenase activity attains a maximal value in two to five hours. The activity declines rapidly after three to four hours of anaerobic incubation unless the pH of the suspending medium is maintained above 6.0. In C. reinhardi the source of electrons for hydrogen photoproduction appears to be derived mainly from water oxidation. However, when the water-splitting complex of photosystem II is impaired by a mutational block, the organism can utilize intracellular organic reductants as substrate for H2 production in a light-dependent reaction involving both PSII and PSI. When photosynthetic electron transport is uncoupled from phosphorylation, a rate of 174 micromoles of hydrogen evolved per mg cells per hour is observed. This rate of hydrogen photoproduction corresponds to 76% of the reductant generating capacity of PSII under steady-state photosynthesis.

Lien, S.↗

A simple generalization of the energy gap law for nonradiative processes

For more than 50 years, an elegant energy gap (EG) law developed by Englman and Jortner [Mol. Phys. 18, 145 (1970)] has served as a key theory to understand and model the nearly exponential dependence of nonradiative transition rates on the difference of energy between the initial and final states. This work revisits the theory, clarifies the key assumptions involved in the rate expression, and provides a generalization for the cases where the effects of temperature dependence and low-frequency modes cannot be ignored. For a specific example where the low-frequency vibrational and/or solvation responses can be modeled as an Ohmic spectral density, a simple generalization of the EG law is provided. Test calculations demonstrate that this generalized EG law brings significant improvement over the original EG law. Both the original and generalized EG laws are also compared with the stationary phase approximations developed for electron transfer theory, which suggests the possibility of a simple interpolation formula valid for any value of EG.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Scalable, two–stage, autoinduction of recombinant protein expression in E. coli utilizing phosphate depletion

We report the scalable production of recombinant proteins in Escherichia coli, reliant on tightly controlled autoinduction, triggered by phosphate depletion in the stationary phase. The method, reliant on engineered strains and plasmids, enables improved protein expression across scales. Expression levels using this approach have reached as high as 55% of the total cellular protein. The initial use of the method in instrumented fed–batch fermentations enables cell densities of ~30 gCDW/L and protein titers up to 8.1 ± 0.7 g/L (~270 mg/gCDW). The process has also been adapted to an optimized autoinduction media, enabling routine batch production at culture volumes of 20 μl (384–well plates), 100 μl (96–well plates), 20 ml, and 100 ml. In batch cultures, cell densities routinely reach ~5–7 gCDW/L, offering protein titers above 2 g/L. Here, the methodology has been validated with a set of diverse heterologous proteins and is of general use for the facile optimization of routine protein expression from high throughput screens to fed–batch fermentation.

59 BASIC BIOLOGICAL SCIENCES↗

Measuring Solvation Interactions of Deep Eutectic Solvents Formed by Metal Chlorides and an Imidazolium Salt by Inverse Gas Chromatography

Deep eutectic solvents (DESs) represent a class of solvents that offer a number of advantages including minimal toxicity, affordability, low vapor pressure, and simple, environmentally friendly preparation methods. They have found utility in areas, such as gas absorption, metal plating, and extractions. However, the relationship between their solvation properties and chemical composition remains poorly understood. In this study, a broad range of Type I DESs composed of metal chlorides and an imidazolium salt were prepared, employed as gas chromatographic stationary phases, and characterized using the Abraham solvation parameter model by inverse gas chromatography. The Abraham solvation parameter model allows for the study of DES solvation properties and the effects of varying structural components on system constants using a linear-free energy relationship. The DESs were investigated by systematically varying their composition, including the type of metal chloride and the molar ratio between the metal chloride and the imidazolium salt. The results show that hydrogen bond acidity, hydrogen bond basicity, and dipolarity/polarizability interactions are strongly influenced by the type of metal chloride within the DES and the ratio of metal chloride to imidazolium salt in the eutectic mixture. Furthermore, a column pretreatment procedure is presented that enables the effective coating of highly polar DESs onto open tubular capillary gas chromatography columns.

deep eutectic solvent↗

Lab-Scale Study of the Calcium Carbonate Dissolution and Deposition by Marine Cyanobacterium Phormidium subcapitatum

Suggestions that calcification in marine organisms changes in response to global variations in seawater chemistry continue to be advanced (Wilkinson, 1979; Degens et al. 1985; Kazmierczak et al. 1986; R. Riding 1992). However, the effect of [Na+] on calcification in marine cyanobacteria has not been discussed in detail although [Na+] fluctuations reflect both temperature and sea-level fluctuations. The goal of these lab-scale studies therefore was to study the effect of environmental pH and [Na+] on CaCO3 deposition and dissolution by marine cyanobacterium Phormidium subcapitatum. Marine cyanobacterium P. subcapitatum has been cultivated in ASN-III medium. [Ca2+] fluctuations were monitored with Ca(2+) probe. Na(+) concentrations were determined by the initial solution chemistry. It was found that the balance between CaCO3 dissolution and precipitation induced by P. subcapitatum grown in neutral ASN III medium is very close to zero. No CaCO3 precipitation induced by cyanobacterial growth occurred. Growth of P. subcapitatum in alkaline ASN III medium, however, was accompanied by significant oscillations in free Ca(2+) concentration within a Na(+) concentration range of 50-400 mM. Calcium carbonate precipitation occurred during the log phase of P. subcapitatum growth while carbonate dissolution was typical for the stationary phase of P. subcapitatum growth. The highest CaCO3 deposition was observed in the range of Na(+) concentrations between 200-400 mM. Alkaline pH also induced the clamping of P. subcapitatum filaments, which appeared to have a strong affinity to envelop particles of chemically deposited CaCO3 followed by enlargement of those particles size. EDS analysis revealed the presence of Mg-rich carbonate (or magnesium calcite) in the solution containing 10-100 mM Na(+); calcite in the solution containing 200 mM Na(+); and aragonite in the solution containing with 400 mM Na(+). Typical present-day seawater contains xxmM Na(+). Early (Archean) seawater was likely less saline. The division of marine cyanobacterium P. subcapitatum is associated with periodic deposition and dissolution of CaCO3, the rhythms and intensity of which are dependent on concentrations of both OH(-) and Na(+). Thus, the role of present-day marine cyanobacteria in the global carbonate cycle might be reduced to aggregation and recrystallization of available CaCO3 particles in marine water rather than long-term precipitation and accumulation of CaCO3 deposits. For lower Na(+) concentrations, precipitation of carbonates by cyanobacteria would be even less significant. These results suggest that the lack of calcified cyanobacteria in stromatalite-bearing Precambrian sequences can be explained not only by high dissolved inorganic carbon concentrations but also by lower salinity, as well as possible lower pH compared to present-day oceans.

Karakis, S. G.↗

Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network

Bacterial gene expression is orchestrated by numerous transcription factors (TFs). Elucidating how gene expression is regulated is fundamental to understanding bacterial physiology and engineering it for practical use. In this study, a machine-learning approach was applied to uncover the genome-scale transcriptional regulatory network (TRN) in Pseudomonas putida KT2440, an important organism for bioproduction. We performed independent component analysis of a compendium of 321 high-quality gene expression profiles, which were previously published or newly generated in this study. We identified 84 groups of independently modulated genes (iModulons) that explain 75.7% of the total variance in the compendium. With these iModulons, we (i) expand our understanding of the regulatory functions of 39 iModulon associated TFs (e.g., HexR, Zur) by systematic comparison with 1993 previously reported TF-gene interactions; (ii) outline transcriptional changes after the transition from the exponential growth to stationary phases; (iii) capture group of genes required for utilizing diverse carbon sources and increased stationary response with slower growth rates; (iv) unveil multiple evolutionary strategies of transcriptome reallocation to achieve fast growth rates; and (v) define an osmotic stimulon, which includes the Type VI secretion system, as coordination of multiple iModulon activity changes. Taken together, this study provides the first quantitative genome-scale TRN for P. putida KT2440 and a basis for a comprehensive understanding of its complex transcriptome changes in a variety of physiological states.

09 BIOMASS FUELS↗

Influence of ion-pairing reagents on the separation of intact glycoproteins using hydrophilic-interaction liquid chromatography - high-resolution mass spectrometry

Hydrophilic-interaction liquid chromatography (HILIC) of intact proteins offers high-resolution separations of glycoforms of glycoproteins differing in the number of (neutral) glycans. However, to obtain efficient separations it is essential that the positively charged sites of the proteins are shielded by acidic (negative) ion-pair reagents (IPRs), so as to enhance the contribution of the hydroxyl groups of the (neutral) sugars in the glycoprotein. Here, we studied the influence of various IPRs that differ in physico-chemical properties, such as hydrophobicity and acidity, on the capillary-scale HILIC separation of intact (glyco)proteins. We evaluated the use of fluoroacetic acid (MFA), difluoroacetic acid (DFA), trifluoroacetic acid (TFA), and heptafluorobutyric acid (HFBA) as diluents for sample preparation, as solvents for sample loading on a reversed-phase trap prior to the HILIC separation, and as mobile-phase components for HILIC and HILIC-MS. To reduce the contribution of ion-exchange interaction with the (silica-based) stationary phase, we used an acrylamide-based monolithic column. We studied the influence of the different IPRs on each step of the separation of a mixture of proteins of different size and hydrophilicity and on the separation of the five glycoforms of ribonuclease B. The content of IPR in the sample was shown not to affect the separation and the MS detection. However, a low content of TFA and DFA in the mobile phase is favourable, as it reduces adduct formation and leads to higher signal intensity. The optimized HILIC conditions successfully resolved nine major glycoforms groups of a ~40 kDa glycoprotein horseradish peroxidase (HRP), as an example of a complex glycoprotein.

59 BASIC BIOLOGICAL SCIENCES↗

Velocity Discontinuity Propagation Model Validation Using an Approximate Point Source in Motion

The classic geometric acoustic solution for propagation through a mean flow velocity discontinuity is evaluated experimentally using an approximate point source in motion. The geometric approximation of the pressure field in both the frequency and time domains is first revisited for arbitrary subsonic flow and source motion along the flow axis. The derivation, computed via the method of stationary phase, shows the expected Doppler behavior of the radiated acoustic field due to the source motion acting in conjunction with the convective amplification effect for a stationary source in flow. The model is validated with a minimally intrusive, approximate point source of heat in the Quiet Flow Facility at the NASA Langley Research Center. Within the limitations of the experiment in this open-jet wind tunnel, data generally show agreement with the model across a range of flow speeds and microphone positions for a broad range of frequencies. Where disagreement between measurement and theory is noted, possible causes are discussed.

wind tunnel testing↗

New results on mean time-to-first-slip for a first-order loop

Approximate results are derived from a new expression for the mean time-to-first-slip for a first-order loop with arbitrary periodic equivalent phase detector characteristic in the presence of frequency detuning. They are accurate for loop signal-to-noise ratios greater than 3 dB or less than 0 dB. The approximations found serve to provide insight into the mean first slip time dependence on the shape of the equivalent phase detector characteristic and the frequency detuning, and dependence on loop parameters. The new expression itself is also of theoretical interest, since it allows one to explicitly express the stationary phase error probability density function and probability current in terms of the mean first slip time. This sheds further light on the interconnections between the conventional modulo-2 pi approach and the renewal theory approach to the Fokker-Planck method. Extensions to nonperiodic equivalent phase detector characteristics are also considered.

Chie, C. M.↗

Flight contaminant trace analyser. Phase 1: Chromatographic input system

The purpose of this investigation was to develop two chromatographic columns which would enable a mass spectral identification of 40 specified compounds. The columns are for use in a toxic gas analyzer, which incorporates an automated gas chromatograph-mass spectrometer. Different types of stationary phases were investigated. The columns used were of the open tubular capillary type and were made of nickel. Limitations of initial and final temperature of operation led to final development of a column which could resolve most of the compounds required. The few unresolved components are capable of resolution and identification by the mass spectrometer. The columns (182m Ni x 0.8m 0.D x 0.5mm I.D) coated with Witconal La 23, yielded in excess of 200,000 theoretical plates and completed the analysis in less than 90 minutes using a carrier gas flow rate of 4 cc/min hydrogen.

Zlatkis, A.↗

Biodosimetry as a New Paradigm for Determination of Radiation Risks and Risk-Mitigation in Astronauts Exposed to Space Radiation

Predicting risk of cancer in astronauts exposed to space radiation is challenging partly because uncertainties of absorption of dose and the processing of dose-related damage at the cellular level degrade the confidence of predicting the expression of cancer. Cellular biodosimeters that simultaneously report: 1) the quantity of absorbed dose after exposure to ionizing radiation, 2) the quality of radiation delivering that dose, and 3) the macromolecular profiles related to malignant transformation in cells absorbing that dose would therefore be useful. An approach to such a multiparametric biodosimeter will be reported, This is the demonstration of two dose-responsive field-effects of enhanced protein-expression. In one case, expression of keratin 18 (K18) in cultures of human mammary epithelial cells (HMEC) irradiated with cesium-137 gamma-rays is enhanced following exposure of log phase cells to relatively low doses of 30 to 90 cGy. K18 has been reported by a marker for tumor staging and for apoptosis. In the second case, expression of connexin 43 (Cx43) is increased in irradiated stationary phase cultures of HMEC, indicating enhanced formation of gap junctions. Gap junctions have been reported to be involved in bystander effects following irradiation. It is a biodosimeter for assessing radiogenic damage. It is suggested further that such biomolecular dosimetry may introduce a new paradigm for assessing cancer risk and risk-mitigation in individuals, a requirement for managing radiation health in astronauts during extended missions in space. This new paradigm is built upon the statistical power provided by the use of functional genomics and proteomics represented in combined gene- and protein-expression assays.

Richmond, Robert↗

Modified gravitational wave propagation with higher modes and its degeneracies with lensing

Low-energy alternatives to General Relativity (GR) generically modify the phase of gravitational waves (GWs) during their propagation. As detector sensitivities increase, it becomes key to understand how these modifications affect the GW higher modes and to disentangle possible degeneracies with astrophysical phenomena. We apply a general formalism — the WKB approach — for solving analytically wave propagation in the spatial domain with a modified dispersion relation (MDR). We compare this WKB approach to applying a stationary phase approximation (SPA) in the temporal domain with time delays associated to the group or particle velocity. To this end, we extend the SPA to generic signals with higher modes, keeping careful track of reference phases and arrival times. We find that the WKB approach coincides with the SPA using the group velocity, in agreement with the principles of wave propagation. We then explore the degeneracies between a GW propagation with an MDR and a strongly-lensed GW in GR, since the latter can introduce a frequency-independent phase shift which is not degenerate with source parameters in the presence of higher modes. We find that for a particular MDR there is an exact degeneracy for wave propagation, unlike with the SPA for particle propagation. For the other cases, we search for the values of the MDR parameters that minimize the χ 2 and conclude that strongly-lensed GR GWs could be misinterpreted as GWs in modified gravity. As a result, future MDR constraints with higher mode GWs should include the possibility of frequency-independent phase shifts, allowing for the identification of modified gravity and strong lensing distortions at the same time.

79 ASTRONOMY AND ASTROPHYSICS↗

Squeezed states and path integrals

The continuous-time regularization scheme for defining phase-space path integrals is briefly reviewed as a method to define a quantization procedure that is completely covariant under all smooth canonical coordinate transformations. As an illustration of this method, a limited set of transformations is discussed that have an image in the set of the usual squeezed states. It is noteworthy that even this limited set of transformations offers new possibilities for stationary phase approximations to quantum mechanical propagators.

Daubechies, Ingrid↗