NASA High Performance Spaceflight Computing (HPSC) Overview
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Wesley Powell↗
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NASA High Performance Spaceflight Computing (HPSC) Overview
Explore the source record for details and available documents.
Wesley Powell↗
Somatic Mutation Analysis in Spaceflight: NASA Twins Genome Study
The NASA Twins Genome Study investigates the effects of spaceflight on somatic mutation accumulation by comparing genome-wide sequence data from a spaceflight astronaut and his Earth-bound twin. Utilizing advanced computational software on high performance computers, this study identifies and maps somatic mutations, with implications for understanding spaceflight-associated health risks, including cancer, neurodegeneration, and cardiovascular disease. The findings aim to bridge rodent and human space research, offering insights into tissue-specific pathophysiology, risk models, and potential therapeutic interventions.
somatic mutation↗
Measuring Expert and Novice Performance within Computer Security Incident Response Teams.
Abstract not provided.
Emmanuel, Glory Ruth↗
Characterizing I/O Performance of Computational Simulation Applications.
Abstract not provided.
Widener, Patrick↗
Monitoring SLAC High Performance UNIX Computing Systems
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Lettsome, A.↗
Measuring Human Performance within Computer Security Incident Response Teams.
Abstract not provided.
McClain, Jonathan T.↗
Assessing the Performance ofQuantum Computers with Machine Learning.
Abstract not provided.
Young, Kevin↗
Towards Lightweight Data Integration Using Multi-Workflow Provenance and Data Observability
Modern large-scale scientific discovery requires multidisciplinary collaboration across diverse computing facilities, including High Performance Computing (HPC) machines and the Edge-to-Cloud continuum. Integrated data analysis plays a crucial role in scientific discovery, especially in the current AI era, by enabling Responsible AI development, FAIR, Reproducibility, and User Steering. However, the heterogeneous nature of science poses challenges such as dealing with multiple supporting tools, cross-facility environments, and efficient HPC execution. Building on data observability, adapter system design, and provenance, we propose MIDA: an approach for lightweight runtime Multi-workflow Integrated Data Analysis. MIDA defines data observability strategies and adaptability methods for various parallel systems and machine learning tools. With observability, it intercepts the dataflows in the background without requiring instrumentation while integrating domain, provenance, and telemetry data at runtime into a unified database ready for user steering queries. We conduct experiments showing end-to-end multi-workflow analysis integrating data from Dask and MLFlow in a real distributed deep learning use case for materials science that runs on multiple environments with up to 276 GPUs in parallel. We show near-zero overhead running up to 100,000 tasks on 1,680 CPU cores on the Summit supercomputer.
Santos Souza, Renan↗
Integrating Artificial Intelligence into Science Gateways
Science gateways are altering the manner in which people interact with high performance computing (HPC) by providing a web browser based interface to advanced computing platforms. In particular, science gateways lower the barrier to using HPC by simplifying the process of submitting workloads to such systems and by offloading the efforts required to use HPC to the maintainers of the system. While science gateways decrease the time-to-science that comes with using such advanced systems, progress can still be made in improving the user's experience. In this paper we explore two strategies for integrating artificial intelligence tools commonly found in non-HPC service workflows: voice activated assistants and chatbots. Since August 2021, the HPC group at Idaho National Laboratory answers an average of 581 support tickets per month of which a large percentage could be addressed via these two strategies. This work defines the key capabilities that an HPC voice activated assistant and chatbot would need to address for a userbase consisting of largely non-expert users as well as a design for integration into the Open OnDemand science gateway.
97 MATHEMATICS AND COMPUTING↗
DuoModel: Leveraging Reduced Model for Data Reduction and Re-Computation on HPC Storage
High-performance computing (HPC) applications generate large amounts of floating-point data that need to be stored and analyzed efficiently to extract the insights and advance knowledge discovery. With the growing disparities between compute and I/O, optimizing the storage stack alone may not suffice to cure the I/O problem. There has been a strong push in the HPC communities to perform data reduction before data is transmitted to storage in order to lower the I/O cost. However, as of now, neither lossless nor lossy compressors can achieve the adequate reduction ratio that is desired by applications. This paper proposes DuoModel, a new approach that leverages the similarity between the full and reduced application models, and further improve the data reduction ratio. DouModel further improves the compression ratio of state-of-the-art compressors via compressing the differences (termed as delta) between the data products of the two models. For data analytics, the high fidelity data can be re-computed by launching the reduced model and applying the compressed delta. Our evaluations confirm that DuoModel can further push the limit of data reduction while the high fidelity of data is maintained.
Luo, Huizhang (ORCID:0000000323920267)↗
Defining quantum-ready primitives for hybrid HPC-QC supercomputing: a case study in Hamiltonian simulation
As computational demands in scientific applications continue to rise, hybrid high-performance computing (HPC) systems integrating classical and quantum computers (HPC-QC) are emerging as a promising approach to tackling complex computational challenges. One critical area of application is Hamiltonian simulation, a fundamental task in quantum physics and other large-scale scientific domains. This paper investigates strategies for quantum-classical integration to enhance Hamiltonian simulation within hybrid supercomputing environments. By analyzing computational primitives in HPC allocations dedicated to these tasks, we identify key components in Hamiltonian simulation workflows that stand to benefit from quantum acceleration. To this end, we systematically break down the Hamiltonian simulation process into discrete computational phases, highlighting specific primitives that could be effectively offloaded to quantum processors for improved efficiency. Our empirical findings provide insights into system integration, potential offloading techniques, and the challenges of achieving seamless quantum-classical interoperability. We assess the feasibility of quantum-ready primitives within HPC workflows and discuss key barriers such as synchronization, data transfer latency, and algorithmic adaptability. These results contribute to the ongoing development of optimized hybrid solutions, advancing the role of quantum-enhanced computing in scientific research.
97 MATHEMATICS AND COMPUTING↗
Extended Applications of Subgrid Representation in the 2D/1D Method
Recent efforts in MPACT have focused on improving the performance of the 2D/1D subplane implementation to help target computational performance goals. Here, we build on previous efforts that targeted the use of subgrid treatments to improve the accuracy of control rod representation, presenting three additional applications of subgrid treatments with the goal of reducing the computational burden of simulations. These subgrid applications include treatment of spacer grids, thermal feedback, and axial reflector material representation. With these approaches, a single method of characteristics (MOC) plane can contain several different materials axially that are represented explicitly via subgrids on the coarse mesh finite difference (CMFD) mesh but are axially homogenized on the MOC mesh. This allows for a substantial reduction in the number of MOC planes needed in the calculation through the introduction of an approximate treatment, particularly with regard to the self-shielded cross sections and MOC-informed radial current coupling coefficients in CMFD. Several test problems ranging from single rod to quarter core are used to assess the solution accuracy and performance of these various subgrid representations. Overall, the accuracy of the approximations seems very reasonable, with extremely small differences in eigenvalue observed and maximum pin power errors in the 0.5% to 1.0% range. Several cases show substantial value in the compromise between accuracy and computational performance. Others highlight the new computational hurdles that future research will aim to resolve.
22 GENERAL STUDIES OF NUCLEAR REACTORS↗
CALORIE: A Constraint Language and Optimizing Runtime for Exascale Power Management (Final Report)
This final technical report summarizes the key accomplishments on the CALORIE project, a DOE Early Career award received by PI Henry Hoffmann at the University of Chicago. CALORIE’s main goal was to create principled methodologies, tools, and practices to help scientists and high-performance computing (HPC) operators maximize the performance and insights obtained from scientific computing applications in the face of exascale power constraints. The project accomplished these goals by completing the following objectives: • Designing a language for describing application goals (including constraints and objectives) and system capabilities. The application goals will include things like which simulations or simulations plus in situ analysis will be run together, what the power constraints are, and what requirements there are for in situ analysis (for example, a desired frame rate for visualization). The system capabilities include all components that can be adjusted to tradeoff power and performance. • Designing a runtime system that takes specified goals and capabilities and dynamically determines what capabilities to use to meet the goals. This runtime adapts to changes in goals, application behavior, or available capabilities to automatically maintain the goals despite unexpected disturbances. • Developing a foundational understanding of how power constraints affect the problem of scheduling applications in large-scale systems. This report provides an overview of the accomplishments related to each of these key objectives.
97 MATHEMATICS AND COMPUTING↗
Integrated Research Infrastructure Architecture Blueprint Activity (Final Report 2023)
The complexity of scientific pursuits is increasing rapidly with aspects that require dynamic integration of experiment, observation, theory, modeling, simulation, visualization, machine learning (ML), artificial intelligence (AI), and analysis. Research projects across the Department of Energy (DOE) are increasingly data and compute intensive. Innovative research teams are accelerating the pace of discovery by using high-performance computational and data tools in their research workflows and leveraging multiple research infrastructures. Additionally, several recent high-level U.S. government reports underscore the necessity of a new advanced computing ecosystem for international competitiveness and national security. International competitors are moving forward with major research infrastructure integration efforts that seek to capture a competitive advantage in the global innovation race. Owing to its unparalleled constellation of world-class experimental and observational facilities and high-performance and extreme-scale computational, data, and networking infrastructure, DOE is positioned to be a global leader in this new era of integrated science. However, this new integration paradigm will demand continuing evolution to ensure the U.S. remains a global leader in research and innovation. The DOE Office of Science (SC) has seized on the strategic importance of integration and has adopted a vision for Integrated Research Infrastructure (IRI): To empower researchers to meld DOE’s world-class research tools, infrastructure, and user facilities seamlessly and securely in novel ways to radically accelerate discovery and innovation. To respond to the evolving computational requirements of research and the competitive international innovation landscape, experimental facilities could be connected with high performance computing resources for near real-time analysis, and resources should be provided for merging enormous and diverse data for AI/ML techniques and analysis.
97 MATHEMATICS AND COMPUTING↗
NREL Stratus - Enabling Workflows to Fuse Data Streams, Modeling, Simulation, and Machine Learning
Integrating cloud services into advanced computing facilities provides significant new capabilities over focusing solely on traditional high performance computing (HPC) workloads. This brings complementary capabilities as well as enabling new focused roles for HPC. They are especially potent for workflows that fuse data streams, modeling and simulation ('modsim') and machine learning. A key challenge to adopting a hybrid edge-cloud-HPC model is to align optimal capability, data, and user intent on the right resources for each step in a workflow.?The NREL Stratus service provides a basis for this: Stratus layers capabilities needed to make?cloud services accessible to a lab-based scientific community on commercial offerings, and; currently supports upwards of 200 projects ranging from IOT integration to traditional modeling and simulation. This provides a real-world inventory of scientific workflow elements. A growing knowledge base enables placing these elements appropriately between the edge, cloud, and traditional HPC. This paper outlines a vision via reference architecture and the application of that architecture in a typical workflow highlighting multiple components: sensor data intake, cleaning and transforming (edge/cloud suitable); generation of synthetic data through modsim, computationally heavy ML training and hyperparameter optimization (HPC suitable), and; inference and deployment (cloud ideal). Every step in such a workflow involves a cost-benefit analysis regarding the data movement, computational efficiency, availability, latency, and resource capabilities. The reference architecture and examples outlined allow for understanding new opportunities in the context of emerging workflows that combine IOT, cloud, and HPC to bolster scientific productivity.
AI↗
28 NREL Stratus - Enabling Workflows to Fuse Data Streams, Modeling, Simulation, and Machine Learning: Preprint
Integrating cloud services into advanced computing facilities provides significant new capabilities over focusing solely on traditional high performance computing (HPC) workloads. This brings complementary capabilities as well as enabling new focused roles for HPC. They are especially potent for workflows that fuse data streams, modeling and simulation ('modsim') and machine learning. A key challenge to adopting a hybrid edge-cloud-HPC model is to align optimal capability, data, and user intent on the right resources for each step in a workflow.?The NREL Stratus service provides a basis for this: Stratus layers capabilities needed to make?cloud services accessible to a lab-based scientific community on commercial offerings, and; currently supports upwards of 200 projects ranging from IOT integration to traditional modeling and simulation. This provides a real-world inventory of scientific workflow elements. A growing knowledge base enables placing these elements appropriately between the edge, cloud, and traditional HPC. This paper outlines a vision via reference architecture and the application of that architecture in a typical workflow highlighting multiple components: sensor data intake, cleaning and transforming (edge/cloud suitable); generation of synthetic data through modsim, computationally heavy ML training and hyperparameter optimization (HPC suitable), and; inference and deployment (cloud ideal). Every step in such a workflow involves a cost-benefit analysis regarding the data movement, computational efficiency, availability, latency, and resource capabilities. The reference architecture and examples outlined allow for understanding new opportunities in the context of emerging workflows that combine IOT, cloud, and HPC to bolster scientific productivity.
AI↗
"Forward" Projects Boost U.S. Leadership in Advanced Computing and Artificial Intelligence
High-performance computing (HPC) has been an indispensable research tool for accessing physical realms difficult, or impossible, achieve with experiment alone. For several decades, the Department of Energy’s (DOE’s) Office of Science has deployed sophisticated HPC systems for solving the nation’s most pressing grand challenge problems in energy, climate change, and human health. In addition, DOE’s National Nuclear Security Administration (NNSA) has adeptly applied HPC in support of key national security objectives, such as nuclear science and stockpile modernization and stewardship. Over time, HPC systems have become increasingly more complex and capable, and as each new machine has come online, scientists and engineers have taken advantage of vast increases in compute power to accelerate scientific discoveries and engineering innovation.
42 ENGINEERING↗